Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0326 ATGACTGGGGGAGATGCCCAAAAGAGGAAGAGAATCGCCATAATTGGAGTCTCCACCTTCTTGCTGGTGGCCATGGTGGTGGCGGTCACAGTTAGTGTCGGCTTCGGCAAGGATGGAGCCAACGCAGATTCAAAAGAAAACAGCAAATCCAGCGTGTCTTCATCAATGAAAGCCGTGAAAACTCTATGCGCACCCACAGATTACAAGAAGGATTGCGAGGAGAGTCTATCATCACACGCCGGAAACATCACCGACCCAAGAGAGCTCATCAAAATTGCGTTCAACGTGACCATCGCCCGAATCGGGGAAGGTTTGGAGAAATCGCAATTGTTGCAAGAAGCTGAAAAAGACCCAAGAACCAAAGAGGCTCTCGACACATGTAAGGACCTCATGCACCTCTCAATCGAGGAGTTCAAGAGATCTCTCGAGAGGTTTGGAAAGTTTGACCTCAACAACCTCGACAGCATCCTAACAAGCCTCAAGGTTTGGCTCAGTGGTGCCATAACATACCAAGAGACATGTTTGGATGCGTTTGAGAACACCACAAGCGATGCTGGTCATAAAATGGCAACCGCTTTGCAAACCGCCATGCGTATGAGCAGCAATGGTTTGTCCATCATCACTGAACTCTCCAAGACTCTTACTGAGATGCACGTGACCAAGCCTGCTGGGCGCCGCCTTTTGAAGGAGGGTGGGGACAACGAGTTTGAGCTTCCCGAATGGGTTGATGACCGTGTTGGTGTTAGGAGACTTCTGCGTATGACTGCACGAAAGCTCAGCGCGCACGTGGTTGTGGCTAAGGATGGGAGTGGAAACTTCACCACCATCAGCGAGGCATTGAAGCATGTGCCCAAGAAGAACATGAAGCCATTCATTATCTACATCAAGGAGGGGGTTTACAACGAGTATGTTGAGGTTGCAAGAAACATGACCCATGTTGTTTTTGTTGGTGATGGTGGTAAGAAGACACGGATCACTGGCAGCAAAAACTTTGTGGATGGGGTTGGTACCTTCAGAACCGCCAGTTCTGCTATTCTTGGAGATTACTTTGTTGGAATTGGTGTCGGATTTGAGAATTCCGCTGGAGCTGCAAAACATCAAGCAGTAGCTTTGAGGGTTCAAGCTGACAAGTCCATCTTCTACAAATGCAGAATGGACGGGTTCCAAGACACACTCTATGCTCACACCATGCGTCAATTCTACAGGGATTGCATCATTTCAGGCACCATCGACTTCGTCTTCGGTGATGCTGTGGCTGTTATGCAGAACTGCACTTTCGTTGTCCGAAAGCCACTAGAAAACCAGCAATGCATTGTGACCGCACAAGGAAGGAAAGAGAGGAACCAGCCATCAGGAATAGTCATCCAAGGAGGTTCCATCGTGTCAGATCCCAAATACTTCCCTGTCAGGTTTGACAACAAGGCCTACTTGGCACGTCCATGGAAGAATTTCTCAAGAACCATCTTCATGGACACCTACATTGGAGACCTGATCACACCCGATGGTTACATGCCATGGCAGTTAATGGATGGAACCTTAGCTGGAATGGACACTTGCTACTACGCTGAGTTCAACAACCGTGGACCCGGTTCAGACCAGTCCAAGCGTGTGAAATGGCCAGGGGTCAAGACCCTAACATCAGACGTTGCTATCAGTTTCTCGCCATCTAGATTCTTCCACGGAGATGACTGGATCAAGGTTACTAGAGTACCTTACAACCCTGGCAAGGTCACATTATCCCCCAGTACTCATCATTAA 1758 0.4869 MTGGDAQKRKRIAIIGVSTFLLVAMVVAVTVSVGFGKDGANADSKENSKSSVSSSMKAVKTLCAPTDYKKDCEESLSSHAGNITDPRELIKIAFNVTIARIGEGLEKSQLLQEAEKDPRTKEALDTCKDLMHLSIEEFKRSLERFGKFDLNNLDSILTSLKVWLSGAITYQETCLDAFENTTSDAGHKMATALQTAMRMSSNGLSIITELSKTLTEMHVTKPAGRRLLKEGGDNEFELPEWVDDRVGVRRLLRMTARKLSAHVVVAKDGSGNFTTISEALKHVPKKNMKPFIIYIKEGVYNEYVEVARNMTHVVFVGDGGKKTRITGSKNFVDGVGTFRTASSAILGDYFVGIGVGFENSAGAAKHQAVALRVQADKSIFYKCRMDGFQDTLYAHTMRQFYRDCIISGTIDFVFGDAVAVMQNCTFVVRKPLENQQCIVTAQGRKERNQPSGIVIQGGSIVSDPKYFPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQLMDGTLAGMDTCYYAEFNNRGPGSDQSKRVKWPGVKTLTSDVAISFSPSRFFHGDDWIKVTRVPYNPGKVTLSPSTHH* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0326 585 Gene3D - 256 576 IPR012334 -
Lja1g0326 585 CDD PMEI-like_3 61 212 - -
Lja1g0326 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Lja1g0326 585 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Lja1g0326 585 PANTHER PECTINESTERASE 12 577 - -
Lja1g0326 585 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Lja1g0326 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
Lja1g0326 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 210 IPR006501 GO:0004857
Lja1g0326 585 PANTHER PECTINESTERASE 12 577 - -
Lja1g0326 585 Pfam Pectinesterase 262 562 IPR000070 GO:0030599|GO:0042545
Lja1g0326 585 SMART PMEI_2 54 206 IPR006501 GO:0004857
Lja1g0326 585 SUPERFAMILY Pectin lyase-like 260 574 IPR011050 -
Lja1g0326 585 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0326 Lja-Chr1 2878053 2880952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0326 5 582 Carbohydrate Esterase AT3G05610 49.233 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0326 K01051 - gmx:100801686 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0326 1 2878053 2880952 Lja5g1414 5 14242028 14243782 PCT