Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0324 ATGGAAGTTCTTCTAAATCTTCCTCAACTAATGATTTTCCCTGTAATCCTGCTTATTATTGGCCACTTTTGTCTTGGTACGGCCATGAATTGTGGTGGAAACCAAGTTGCAAAAACTCTCACTATCGATCGACGTGGCAAAGGAGATTTCAAAACGATTCAAGCTGGTATTGATTCTGTAAAGAAAAACAATGGTCAGTGGGTTAAGATTCACATAAAATCTGGTATATACATGGAAAAGGTTTCAATTCCAAAAGAAAAACCATGCATTATCTTAGAAGGAGACAATAGTCACAAAACAATCATTACTTGTAATGATCACCGATTAACTACAAGTTGGGGTGCTACATTCGTTTCAACTGCACCTAATGTGATTGTAAGTGGCATTACCTTCAAGAACTCGTTTAACTTGGTAAGGGGTAATTTACCGGGTACAAGAACGAAAATTGAACCAGCAGCGGCAGCTGTTGTATATGGAGACCAATCTTACTTCTACAAGTGTAGTTTCTTGGGTTATCAAGACACTCTGATGGCTGCAAATGGACGCCATTACTTTAAAGATTGCTACATTCAAGGTGAAGTCGACTTCATTGCTGGTGCTGGCCAATCTTATTTCAAGAATTGCACGATCAATGCAAGACTAGGAAATTCTGCACCTCCAGGTTTTATCACAGCCCAACTCAGAAGTTCATTAGATGACCCAAGTGGTTTTGTTTTTGAGGGAGGTTTTGTTGTTGGAACTGGTGAAGTGAGTCTAGGACGAGCATGGGGGCCTTACTCAAGAGTTATATTTCACAGAACAAAATTTTCTTCAGTTGTATCCCCAGAAGGATGGAATGCTTGGGACTTCAGAGGTCACGAGGATAAATTTACATATGCAGAAGTTGATTGTACAGGACCTGGAGCAAATACTTCGAAGCGGGTAAAATGGGAGAAGAAGTTGACTCCTTCACAGCTACAAGCATATTCTTTATCATCTTTCATCAATAAAGATAAATGGCTTGCAAAAATACCAACTATATTCTTGTAA 1029 0.3916 MEVLLNLPQLMIFPVILLIIGHFCLGTAMNCGGNQVAKTLTIDRRGKGDFKTIQAGIDSVKKNNGQWVKIHIKSGIYMEKVSIPKEKPCIILEGDNSHKTIITCNDHRLTTSWGATFVSTAPNVIVSGITFKNSFNLVRGNLPGTRTKIEPAAAAVVYGDQSYFYKCSFLGYQDTLMAANGRHYFKDCYIQGEVDFIAGAGQSYFKNCTINARLGNSAPPGFITAQLRSSLDDPSGFVFEGGFVVGTGEVSLGRAWGPYSRVIFHRTKFSSVVSPEGWNAWDFRGHEDKFTYAEVDCTGPGANTSKRVKWEKKLTPSQLQAYSLSSFINKDKWLAKIPTIFL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0324 342 PANTHER PECTINESTERASE 8 340 - -
Lja1g0324 342 Pfam Pectinesterase 42 330 IPR000070 GO:0030599|GO:0042545
Lja1g0324 342 Gene3D - 33 340 IPR012334 -
Lja1g0324 342 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 8 340 - -
Lja1g0324 342 SUPERFAMILY Pectin lyase-like 36 339 IPR011050 -
Lja1g0324 342 ProSitePatterns Pectinesterase signature 1. 64 83 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0324 Lja-Chr1 2866665 2869868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0324 13 287 Carbohydrate Esterase AT2G19150 43.525 1.83e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0324 - - var:108336510 386.726