Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0321 ATGATGATGATGACAATGGAGGGAATGATGGATAAGGGGGTTCTGGATGATGTGATAAGGAGGTTGCTGGAAGGGAAAGGAGGAAAACAGGTGCAGCTCTCTGAGTCGGAGATCCGTCAACTCTGCGTCAACGCGAGACAAATCTTCCTCTCTCAGCCCAATCTCCTTGAGCTCCGTGCTCCCATTCGAATCTGCGGTGATATACATGGTCAGTACCAAGACTTGCTGAGGCTTTTTGAATATGGTGGCTACCCTCCTTCTGCAAACTACTTGTTTCTGGGGGATTATGTGGACAGAGGGAAGCAAAGTTTAGAGACTATATGTTTGCTTTTGGCCTACAAAATAAGATATCCGGACAAAATTTATCTCTTGAGAGGAAACCATGAGGATGCGAAGATAAACCGGATATATGGCTTCTATGATGAATGCAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTTACAGACTGCTTTAACTGTTTGCCGGTGGCTGCGCTCATTGACGAAAAGATAATTTGTATGCATGGAGGACTCTCTCCAGAGTTGCAAAATTTAGATCAGATAAGGGAGGTCACAAGGCCCACCGAAATTCCGGATAATGGTCTCCTTTGTGATCTTCTTTGGTCTGATCCTGATAATAGCATTGAGGGCTGGGCAGACAGTGACCGGGGCGTTTCAATGACTTTTGGACCTGATGTTGTCGCGGATTTTCTGGAAAAGAATGATCTTGATCTTGTTTGCAGAGGTCATCAGGTTGTGGAGGATGGTTATGAGTTTTTTGCGAAACGAAGATTAGTCACGATATTTTCTGCTCCAAATTATGGTGGGGAATTTGACAATGCTGGTGCATTGTTGAGCGTGGATGAATCCCTTGTATGTTCCTTCGAGATATTGAAACCCCTTGACAGAGGATCAGGAAGTGGTTCAAAAATGACTCTTAAGAAGCCCCCTAAACTTGGAAAGGTCTAG 972 0.4434 MMMMTMEGMMDKGVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPNLLELRAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKIICMHGGLSPELQNLDQIREVTRPTEIPDNGLLCDLLWSDPDNSIEGWADSDRGVSMTFGPDVVADFLEKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPLDRGSGSGSKMTLKKPPKLGKV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0321 323 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 8 2 313 - -
Lja1g0321 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2 313 - -
Lja1g0321 323 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Lja1g0321 323 Gene3D - 8 307 IPR029052 -
Lja1g0321 323 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Lja1g0321 323 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Lja1g0321 323 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Lja1g0321 323 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Lja1g0321 323 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Lja1g0321 323 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Lja1g0321 323 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Lja1g0321 323 Pfam Calcineurin-like phosphoesterase 62 253 IPR004843 GO:0016787
Lja1g0321 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Lja1g0321 323 SMART pp2a_7 33 303 IPR006186 GO:0016787
Lja1g0321 323 CDD MPP_PP1_PPKL 14 301 - -
Lja1g0321 323 SUPERFAMILY Metallo-dependent phosphatases 16 303 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0321 Lja-Chr1 2829146 2832159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0321 40 249 Calmodulin-binding Proteins AT5G63870 31.600 2.32e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0321 K06269 - gmx:100805030 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0321 1 2829146 2832159 Lja1g0321 1 2829146 2832159 ECH