Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0318 ATGAGTCGAGGTGTTGCAGCTGGAGCCAAGGGGAAGAAGAAGGCGGTGACCTTCACCATTGACTGTGCAAAGCCAGTGGAGGATAAGATCATGGACATTGCTTCACTTGAGAAGTTCCTTCAGGAGAGGATCAAGGTTGGTGGTAAGGCTGGTGCTCTTGGTGATGTTGTCTCCATTGCTCGTGACAAGAACAAGATCTCTGTTACCTCTGACAGCAACTTCTCCAAGAGGTACTTGAAGTACTTGACCAAGAAGTACTTGAAGAAACACAACGTTAGAGACTGGCTCAGAGTGATTGCTTCAAACAAAGATAGAAGTGTTTATGAACTGAGGTACTTCAACATCGCTGAGAACGAAGGGGAGGAAGAAGATTAA 375 0.4587 MSRGVAAGAKGKKKAVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDVVSIARDKNKISVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0318 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lja1g0318 124 Pfam Ribosomal L22e protein family 13 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lja1g0318 124 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 124 - -
Lja1g0318 124 Gene3D - 5 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0318 Lja-Chr1 2775404 2777097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0318 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 84.677 1.22e-64 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0318 K02891 - nnu:104598935 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0318 1 2775404 2777097 Lja5g1425 5 14350155 14352810 PCT