Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0302 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTAGTGAGAATAACAGAGAAGATGCAGTTAAACAGAAATCATTGATTCTGGGCCAGCTCCATAGTCCAAATTCTCATACTTCAACTACAACAAATAATAGCATCAATTCAAACACAAATTCAGAACTACCTCCACTAGTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTCTATCACCAAACACTCTGGTGACCACAAATCGTTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGACCAAAACCTCCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGAACCACCGCAGAAGTTCGAAAACGGGTTTATGTTTGTCCTGAACCCACATGTGTTCACCACAACCCGGCTCGAGCACTAGGCGATCTCACTGGCATAAAAAAGCACTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCGAAGAAATATGCAGTACGGTCTGATTGGAAAGCTCATTCAAAAATATGTGGCACAAAGGAGTACAAATGTGACTGTGGCACCATATTTTCCAGAAGAGACAGCTTCATCACCCATAGAGCTTTCTGCGATGCACTGGCTGATGAGAATAACAAACAGAACGAAGGACAGTTATCAAATATGGGTCCAAACTTGCAGAACCAACCATTAATCCCAAACCTAGCAGCACCATCCTCATTGCCAATCAACACCAATGAACTTATGACAATGACTGCAAAACCCTTCAACATTAACATGACTGCTGCACCCGGAACAACCACATTATTCTCTTCTCCGGCCTCTCTTCTTCAATTGGGGGGTAATTCAAACATATTAGACGAGGCCATGCTCCACAACATGGCCTCACCTCACATGTCAGCCACAGCGTTGCTGCAAAAGGCTGCTCAAATGGGTGCAACAGTGAGTAGTAATAATAACAGTGGCATGGCACCACCATCACAGTCATATGGTATCATGAACCAGCATGTGCACATTAATGGTCAACATGACATTAACTTGTCGTCTCAGTACGACTATAACGGGATGGTTAGTTCAGGAGCTACTGCTGCAGGTAGTGTTGTTGGGATGAGTGGTTTGGAGATGTTCAATGCTATATTGGATCAGAGTAAGGCATTGTCGAGGATCATAGCGCAGAATAGTACTACTGCTCGAAGCAGCAACAGTTTGCATGGTCAATGTGATCCAATTACGAGTGGTGGTGGTGGCAGCAATAATGTTCATGTTAATGGTGGAAATGAAGATGTGATGACTTTGGACTTGCTGGGAATAGGAGGAGGAGGTGGTGGTGCGCATGGCGGTTTCTATGGCGGTGGAGATCAAGGGCGGTCAGAAAGAGATCATGATGATATGTGGAGAAATTGGTCAAACAAGAACACCGGGTTTGAATCGTTTTCGGCAACAGGCAGCATTTGA 1482 0.4433 MSNITSCDSGSFSSENNREDAVKQKSLILGQLHSPNSHTSTTTNNSINSNTNSELPPLVKKKRNLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTAEVRKRVYVCPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVRSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALADENNKQNEGQLSNMGPNLQNQPLIPNLAAPSSLPINTNELMTMTAKPFNINMTAAPGTTTLFSSPASLLQLGGNSNILDEAMLHNMASPHMSATALLQKAAQMGATVSSNNNSGMAPPSQSYGIMNQHVHINGQHDINLSSQYDYNGMVSSGATAAGSVVGMSGLEMFNAILDQSKALSRIIAQNSTTARSSNSLHGQCDPITSGGGGSNNVHVNGGNEDVMTLDLLGIGGGGGGAHGGFYGGGDQGRSERDHDDMWRNWSNKNTGFESFSATGSI* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0302 493 MobiDBLite consensus disorder prediction 403 432 - -
Lja1g0302 493 Gene3D Classic Zinc Finger 144 223 - -
Lja1g0302 493 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g0302 493 MobiDBLite consensus disorder prediction 459 493 - -
Lja1g0302 493 MobiDBLite consensus disorder prediction 31 57 - -
Lja1g0302 493 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Lja1g0302 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 448 - -
Lja1g0302 493 MobiDBLite consensus disorder prediction 477 493 - -
Lja1g0302 493 Pfam Zinc-finger double-stranded RNA-binding 89 111 IPR022755 -
Lja1g0302 493 MobiDBLite consensus disorder prediction 31 73 - -
Lja1g0302 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Lja1g0302 493 SMART c2h2final6 165 185 IPR013087 -
Lja1g0302 493 SMART c2h2final6 89 111 IPR013087 -
Lja1g0302 493 SMART c2h2final6 130 160 IPR013087 -
Lja1g0302 493 MobiDBLite consensus disorder prediction 1 17 - -
Lja1g0302 493 Gene3D Classic Zinc Finger 68 135 - -
Lja1g0302 493 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lja1g0302 493 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0302 Lja-Chr1 2580006 2583917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0302 60 325 IDZ Gene Family AT3G50700 56.550 1.64e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g0302 zf-C2H2_jaz 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0302 - - gmx:100813556 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0302 1 2580006 2583917 Lja5g1446 5 14538768 14544031 PCT