Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0298 ATGTTTGCTTCGGTTGGGAATGGGGGAAATGAGGGAGATGGAGTTTCCGGATCCATTTTGATTCCGAAGCGGTTTGTTTGGCCTTATGGTGGAACAAGGGTGTCTCTGATTGGTTCTTTCACGAGATGGTCAGAACATATACCTATGTCTCCGATGGAGGGATGCCCTGCAGTATTTCAAGTTATTTGGAGCTTAACGCCGGGATATCACCAGTACAAATTTATTGTGGACGGTGAGTGGCGGCATGATGAACAGAAGCCATTTGTAAATGGGAACTATGGACCAATGAATACTATTTACTTAGCGAGAGAACCAAATACTTTACCTACCATCTCGAGTGCTGAAACGCCTGGTAGATCCAACATGGATGTTGATAATGATGTCTTTGGGCATGTGGGAACTAATCCAAGGATGCTGGGGTCTGATCTGGAGGTCTCTCGCCACCGTATATCTATATTCTTGTCTACACATACGGCATATGATTTGCTTCCTGAGTCAGGAAAGGTCGTTGCCTTGGATATAAATTTACCAGTTAAGCAAGCATTCCATGCTTTGCACGAACAGGGTGTGTCTATGGCTCCTCTATGGGATTTTGGCAGGAGTAAGTTTGTTGGAGTGCTTAGTGCAATGGACTTCATTCTAATATTGAAAGAGCTGGGGAATCATGGATCAAAATTGACTGAAGAACAACTTGAGACTCACACTATAGCTGCCTGGAAAGAGGGTAAATTACAGCAACGCAGAGCAGTTGATAGTAATGGGGGATCATATCCTTCCCTTTTTGTTCATGCTGGGCCTCATGAACATCTAAAAGATGTGGCTTTGAAGGTTTTGCAAAATAAGGTATCGACGGTTCCAATCATCCATTCTCCTTCAGAGGACGGTTCATTTCCTCAACTGCTACATCTTGCTTGCCTATCAGGAATACTAAAATGTATATGCAGGCATTTTAAGTACTCATCTAGTTCTTTACCGATTCTTCAAATTCCGATTGGTTCAATACCTTTGGGTACATGGGTGCCTAAAGTTGGGGAACCAAATGGACAGCCATTTGCAATGCTAAGGCCAAATGCTTCTCTTGGTGCTGCTCTGTCGATGTTTGTTCAAGCTGGAGTTAGCTCAATACCGATTGTGGATGATAATGACTCATTGGTTGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCTTATACTCGGATATCTCTCGATCAAATTAGTATTCATCAGGCATTGCTTTTGGGACAGGATGTGAATTCTCCTTTTGGGCTTCACAGTGGCCCCAGATGTTACATGTGTTTGAGGTCTGATTCGTTGCATAAAGTGATGGAGCGGTTGGCAAGCCCAGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGCAGCAAGCGCGTGGAAGGGATTATTTCTTTAAGTGACGTTTTCAAATTCTTGTTAGGCTAA 1452 0.4325 MFASVGNGGNEGDGVSGSILIPKRFVWPYGGTRVSLIGSFTRWSEHIPMSPMEGCPAVFQVIWSLTPGYHQYKFIVDGEWRHDEQKPFVNGNYGPMNTIYLAREPNTLPTISSAETPGRSNMDVDNDVFGHVGTNPRMLGSDLEVSRHRISIFLSTHTAYDLLPESGKVVALDINLPVKQAFHALHEQGVSMAPLWDFGRSKFVGVLSAMDFILILKELGNHGSKLTEEQLETHTIAAWKEGKLQQRRAVDSNGGSYPSLFVHAGPHEHLKDVALKVLQNKVSTVPIIHSPSEDGSFPQLLHLACLSGILKCICRHFKYSSSSLPILQIPIGSIPLGTWVPKVGEPNGQPFAMLRPNASLGAALSMFVQAGVSSIPIVDDNDSLVDIYSRSDITALAKDKAYTRISLDQISIHQALLLGQDVNSPFGLHSGPRCYMCLRSDSLHKVMERLASPGVRRLVIVEAGSKRVEGIISLSDVFKFLLG* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0298 483 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
Lja1g0298 483 SUPERFAMILY CBS-domain pair 148 317 IPR046342 -
Lja1g0298 483 Pfam CBS domain 350 394 IPR000644 -
Lja1g0298 483 Pfam CBS domain 435 482 IPR000644 -
Lja1g0298 483 ProSiteProfiles CBS domain profile. 346 403 IPR000644 -
Lja1g0298 483 ProSiteProfiles CBS domain profile. 430 483 IPR000644 -
Lja1g0298 483 Gene3D Immunoglobulins 18 101 IPR013783 -
Lja1g0298 483 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 483 - -
Lja1g0298 483 SUPERFAMILY CBS-domain pair 350 482 IPR046342 -
Lja1g0298 483 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
Lja1g0298 483 SUPERFAMILY E set domains 21 100 IPR014756 -
Lja1g0298 483 SMART cbs_1 168 217 IPR000644 -
Lja1g0298 483 SMART cbs_1 433 482 IPR000644 -
Lja1g0298 483 SMART cbs_1 350 398 IPR000644 -
Lja1g0298 483 CDD E_set_AMPKbeta_like_N 24 99 - -
Lja1g0298 483 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 483 - -
Lja1g0298 483 Gene3D - 141 318 IPR046342 -
Lja1g0298 483 Gene3D - 319 482 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0298 Lja-Chr1 2517387 2525059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0298 25 111 Protein tyrosine phosphatase (PTP) family AT3G01510 36.667 1.96e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0298 - - gmx:100778117 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0298 1 2517387 2525059 Lja1g0298 1 2517387 2525059 ECH
Lja1g0298 1 2517387 2525059 Lja5g1463 5 15444301 15463764 PCT