Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0297 ATGGCACCAACAAGGAAACCTAGAAGTATGAATAAGCGGTCTTCAAGTTTGAATGAGGTCTCTACTGAGAAAGAGGGGGTTACCTCAAACAAAAAAAACCAACGGAAGAAAAAGTTGTCTAATAAATTGGGATCTCAATGGAATAAGGAAGAACTAGAGCGGTTTTATGAAGCGTACAGGAAGTATGGAAAAGACTGGAAGAAGGTGGCTGTGGCTGTACGTAACAGATCTACAGAAATGGTGGAGGCTCTTTACAACATGAATCGGGCATACCTATCTCTGCCAGAGGGGACGGCTTCTGTTGTTGGCCTAATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGATAGTGAAGCGGAGAGCTATGATGCACCAGGAGCTCAAAAACCTGTTAAACGAAAGCGTGGGAAACATAAACTTAGTGCCTCAAAAGATTCTGTCCAGTCTCCATCAAAAATTGTTTCAAATGATGGTTGCCTCTCTTTATTGAAAAGAAGACGCTTTGATGGCAGCCAACCTCGAGCAGTTGGGAAAAGGACACCTCGCATCCCAGTTAACTACTCTTATAAGAAAAATGATAGGGAAAATTATGTATCACCGCATAAAAGAAGGCTGAAGTCAGATTTGGATGCTAATGATGATGAAGTTGCACATGTCGCAGCTCTGGCATTAACCGAGGCTGCACAAAGAGGTAGCTCTCCCCAAGTTTCTCAAAGGCCATACAGAAGATCAGAGCAGAAGTCCTTTCCTGTTCAAAGCTGGGAAAGAATGCCCCAAGAGTCAGAGACAGGCAAGTTTTATGATACGTCTGTGGATGAAGAGTGCTTGGAAGGTAGTGTAGAGAGCAGGGGAGCTGAAAATGGAGAATATGCTAGAGATACTAGTTCCAAGATGAACATGGAAGGCATAGGCACTGTTGAAGTTCATCAGAAAGGGAAGAAAATTTATAGAAAAAAGGAAAAGAGGGAAACTGTTGGAAACCATCTTCTTGATGATGGTGGAGAAGCATGTAGTGGCACTGAAGAAGGACTTAGTTTTAGGCTGAAGGAAAAGTTTCATACTAAGGATACTAATGCAAGACTAGAGCACACCTCTCTAAAAGGTCAAAGGAAAAAAAGCAAGAAACTTTTCTCTGGAGATGAAAGCTCTGCGTTGGATGCTTTGCAAACTTTGGCTGATCTGTCTCTAATGATACCGACGTCTAAAATGGAATCTGAATCATCTATCCTATTGAAAGAAGAAAGAAAGAATGCTGACGAAATTGAAAAGTCTGCTTTTCCTGGTGGCACATCAACAAGTCAAAACAGAGATAAATGTAAACTCACCGGTTTAAAACAAAAGTTTGCTCATACAGTCCACGGAGTTGACGTTTCAGCCTCCAAAAAGTCTAAAATTGGAAGGGAATCACTAATTGATACTAAGGCTTTCTTTGAATCAAAAGAAAAGCTTCCCTCTGCTGATAGAACATTGAAAAGAAAGCGCGGTCTCATGGTTTCAAAGGTAGCACATACAAAGCTTGATTCTAATGAAAGTCATCCCTTGAATAACCAGGCTATAGATGTAGACAATAAACCAGCAATTATAGGAAAACACACTGATCAGGTTTTCACTCTTGCGAAACGATTGAAGTCATTCAGATCATCGGAAAGTTCCCTGTGTAGTGACCAGAAAGATTTGAGAGTACCAGATGCAGAAAATCCACTTGTGAGTGAAGTAAGTTTATCTACTAAACAAAGAAACAGGCATAAGATGAGTTTACCGAAAAAGGGCATGCCTAAAGAGAAATCTTCTGAGAACACTCTGAAAAGTGAACTTGACAAGTTTTTTGACCCCAGATATGATAGAGAAACGGCATACTGTTTGTTAAAGGAAAAGGTTTCTGCTTGCTTGTCATCTTATAAGGCTCGCAGATGGTGTATGTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTTCCAAAAGGGAGTTCATGGAGTACTTAAATCATGTTGGTCTAGGAAATATACCAAGGCTAACTCGAGTTGAGTGGAGTGTCATAAAAAGTTCTCTTGGAAAACCTCGCAGGTTTTCAGAACATTTTCTTCATGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCTGTTAGGAAACACTACACTGAACTGCGAACTGGTATCAAGGATGGACTTCCGACAGATTTAGCTAAACCTTTATATGTTGGACAACGGGTGATTGCTCTTCACTCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACAGTTGACCATGACAAGTGCAGGGTTCAGTTTGACCGTCCTGAATTGGGTGTTGAATTTGTCAAGGACATTGATTGCATGCCTTTGAACCCATTGGATAATATGCCAGAAGCTCTGAGGAGGCAACTTGGTGGTGCTAAAGTACCTTGTATGGATAAAGAACCACAAATGAAAGGAAATTCAAGTTTTGGAGGGTGCATGGCATGTGTTTCAAATGGAACTGTGGAGAAGGCACCAGCCTCTTCAAGTACTTTGGTTAGCCAGGAAAAGGGGGATGTTAACCCTTCTGTTGCCGAAACAAAGGCTGCCATCATTGATCACCTTTGTACCCAAAAGACTATGTATAGTCAACCTTGTATAATGCCAAATGATCAAGCGAAGGAAGCTGACATTCATGCACTTTCTGAGCTGACACGTGCTCTAGATAAAAAGGAAAGATTGTTAATGGAGCTTAGAAATGCAAATAGTGACATAATGGAAAACCCAAATGACGCAGACTGCATAAAAAATTCAGAGGCTTTCAAGAAGCATTACGCCATGGTTTCTAATGCACTGCTTCATTTGAGGCAACGTAATACTTACACAGGAGACTCTCTGCCACCATGGATGAAGCCCCAAGTAAGATTCAATGTTCATGACGGCCTTCCCAGTACGTTGGATAGTTCTCTAACTCAAGTGTTAGGGTCAACCGTTGTTGAAATTATCAAAGGATCCAGGCTTAAAGCACATACCATGGTGGATGCTGCAATTCAGGCTTTATCTTCAACGAAGGAAGGTGAAGATGCTTTCGTGCGGATTGGGCAGGTATTGGATTGTGTCGATTATCAACAGTTGGCCACCAACTCTAGGTTACCTGTGATCAAGTCCCAGGAGCAAGTGAATGGCAGTTTTGATCACCAGAATAGGTCATTTTGCTGTTCATCTGAGCCTTTCAATGATGCATCCGGTCCAAAATGGCATCGTGATTCCAACAAAGTTGATATTCAAATTCCTTCGGACCTCATCACTTCCTGTGTTGCTACATTATTCATGATACAGACTTGTACTGAACGACAATATCCCCCAGCTGAAGTGGCTCAGATATTAGATTCTGCTGTTACCAGCCTGCACCCATGCAGTCCACAAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATCAAGACCCAGATTTTAGCCCTCATCCCTACATGA 3477 0.4127 MAPTRKPRSMNKRSSSLNEVSTEKEGVTSNKKNQRKKKLSNKLGSQWNKEELERFYEAYRKYGKDWKKVAVAVRNRSTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEAESYDAPGAQKPVKRKRGKHKLSASKDSVQSPSKIVSNDGCLSLLKRRRFDGSQPRAVGKRTPRIPVNYSYKKNDRENYVSPHKRRLKSDLDANDDEVAHVAALALTEAAQRGSSPQVSQRPYRRSEQKSFPVQSWERMPQESETGKFYDTSVDEECLEGSVESRGAENGEYARDTSSKMNMEGIGTVEVHQKGKKIYRKKEKRETVGNHLLDDGGEACSGTEEGLSFRLKEKFHTKDTNARLEHTSLKGQRKKSKKLFSGDESSALDALQTLADLSLMIPTSKMESESSILLKEERKNADEIEKSAFPGGTSTSQNRDKCKLTGLKQKFAHTVHGVDVSASKKSKIGRESLIDTKAFFESKEKLPSADRTLKRKRGLMVSKVAHTKLDSNESHPLNNQAIDVDNKPAIIGKHTDQVFTLAKRLKSFRSSESSLCSDQKDLRVPDAENPLVSEVSLSTKQRNRHKMSLPKKGMPKEKSSENTLKSELDKFFDPRYDRETAYCLLKEKVSACLSSYKARRWCMFEWFYSAIDYPWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYTELRTGIKDGLPTDLAKPLYVGQRVIALHSKTREIHDGSVLTVDHDKCRVQFDRPELGVEFVKDIDCMPLNPLDNMPEALRRQLGGAKVPCMDKEPQMKGNSSFGGCMACVSNGTVEKAPASSSTLVSQEKGDVNPSVAETKAAIIDHLCTQKTMYSQPCIMPNDQAKEADIHALSELTRALDKKERLLMELRNANSDIMENPNDADCIKNSEAFKKHYAMVSNALLHLRQRNTYTGDSLPPWMKPQVRFNVHDGLPSTLDSSLTQVLGSTVVEIIKGSRLKAHTMVDAAIQALSSTKEGEDAFVRIGQVLDCVDYQQLATNSRLPVIKSQEQVNGSFDHQNRSFCCSSEPFNDASGPKWHRDSNKVDIQIPSDLITSCVATLFMIQTCTERQYPPAEVAQILDSAVTSLHPCSPQNLPIYREIQMCMGRIKTQILALIPT* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0297 1158 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Lja1g0297 1158 MobiDBLite consensus disorder prediction 8 24 - -
Lja1g0297 1158 MobiDBLite consensus disorder prediction 573 600 - -
Lja1g0297 1158 PANTHER LIN-9 1 1158 IPR010561 GO:0006351|GO:0017053
Lja1g0297 1158 MobiDBLite consensus disorder prediction 1 43 - -
Lja1g0297 1158 MobiDBLite consensus disorder prediction 231 265 - -
Lja1g0297 1158 Gene3D - 3 99 - -
Lja1g0297 1158 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Lja1g0297 1158 MobiDBLite consensus disorder prediction 118 156 - -
Lja1g0297 1158 Pfam DIRP 646 746 IPR033471 -
Lja1g0297 1158 Coils Coil 699 719 - -
Lja1g0297 1158 CDD SANT 47 88 IPR001005 -
Lja1g0297 1158 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1158 IPR028306 -
Lja1g0297 1158 MobiDBLite consensus disorder prediction 230 265 - -
Lja1g0297 1158 Coils Coil 892 919 - -
Lja1g0297 1158 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Lja1g0297 1158 SMART sant 43 91 IPR001005 -
Lja1g0297 1158 SMART DIRP_2 647 748 IPR033471 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0297 Lja-Chr1 2499508 2516875 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g0297 DIRP 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0297 - - gmx:100816217 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0297 1 2499508 2516875 Lja1g0297 1 2499508 2516875 ECH