Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0294 ATGATCCCATTGGACTGGATGTGGTCACCTCCTAGTGAATTTGATGCTTCATCAAATGATAAGGCTCATTGTCCAAAACGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGAGATTCTTAATCAGCAGTTTAAAATGTACTCATCTCTCTCTCAAACACGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACTGCAGAAACGGACTGGGATCCATGGCGCTATTATGCCTCCTGATCCTGGCAAACCACATCCAGAAGATGTCATGAAACTTCTTTCTGTTGGTCTTGACCTTGATAAAAAACTTTTTGAATTGTGCAGTGAAGCTGAAACCTCTTTATTTTGTACTCCTTCTGACAAATTTAGAGAAACAGACATAATAGGCTCAGCATCACCACCAGCTTCATTGTGTAAAAATGCCAAGTTTCGTGAGGAAGGGATTGACAGTAGTCTCAAATTGTTGACTGTTGATGAAATGCAATCCTCTGAGAAGATTGGAACATTGGACGTAAAGGTTGCTGATAAAGATGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATAAACTCTGATGATGAACTTGTTTGTGAAACGATCTTGAGTCCCTTGCTACCTGCTGCAACAATTGATGAAGTGCTAGAGAAAGCTAGTATGACATATGAGAGTGAGTCCCAAAAGGAATGTCAGGATATACTTGATTCAGTTGATGATATGCTTGAGTTGGAACTACCAAAGGAAAATCCTTCTTGCTCCTCTGATCACAATCATCCTGTTGAAGCTTCATCAAACAGTATGATACCCCAAGTCGATGGTTCCAATGATGAAGAATTCTCAAGGCCAGGTGCTTCTAGTTTGGCTGGAACCTCTTCTTCTGTAGATATAAACAGTGAGAACAAAAGGGCTTCTGGGCACCACAACCATGTGCGGCATGATACCGACACAAGTAATGTTAGTAAAGATAAAAAGAATAAACAGTGGGGGTCTTTGCCTTTTACCATGACCGGTAAGGTTAATAATGATGGAGAACATGCTAATTTATATGCGACTCATCCATTTGAAAGTGAAACTGGAGGTTACGCTCACTCAGATTACTTAACCAAAAATGGGGTTAGAAACAATGCTTGTATTTTAAGAAATATGTCCAAAGGTGCTTCAGATTCAAATGAAGAACATGGATTGGTTAGTTGTTCTTTGCGGGACCTGATGAGGCGAAAGCGATCTTATCGAGTGGAACATGATGAGTGTGAATCTGGAACTACCAAAAAGCTTCTTTTAGACAGGCACAAGGGATCAAATACATGCCTTTGGAAAAAACAACTGGATTTGAAAACAATGGAAACCAATGAAGAAGAAACAGAACTCCTGAAAAATTGTGATCCTAAAGGGAGCAATCATAATAGTTTAGTTTGTTGGAAACTGCCGCTTCCATCTGGCAGTGGTAGTTCTTCACAGGCTAGTATGTCAAAAGATGAATGTTCTGATCAGCATGAAATGAAGTGTCTAGAAGCAAGTATGGTGTTTAGGAACGCCACAAATGAGGCTTCTTCTTTGATGCCTGGAGGACTAGATTTCCATAATCTTGAAAATTTTAATTTTATTGACTCCAGTTCCATCGACCAATCTGTAGCTTGCTGTGGTAAAAACGTTGGCAATGCTTATGCAAAACCTGTAGCTTCTGATGCCAATACCCCAAATCCCATTATACCCACTCAGTTGAAAACAGATGATCCAAGGAGGTCTCAGCAAACTGTTTATGCTGCTTCAAGTAGTGTCCAGAGCTACTCCATTGATGATAAAGTTTCTGCCAAAGATAATTGCATGGATCAAAGTTCTTATGGAAGCATGTGTTTTGTAAAACATGATCAGACGAATTTTTATGAGCATGCTGTGGGCATAAGTGCTGCAAGTGACATGCAGGTGTTGCAAAGTGAAAAGGTTGATAATCAAAAGCTTGGCAAAAAATTGTCGCCTGAGACTATTGGTTCAGACCCCATTGTTCATGACTTGTCCATTGTTCATGACTTGAAGGGTAATCATGTGAAATTAATTGAAATAACCAGAGGCAATAACCCTTTGGCTGACAGTAACCTTGAAAGTAACATGTCATTGCCAGCTGTCTTTAATACCCATTTACATTTGGATGAGGACAGCTGTCATGAAATGCCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCTGCAAGGGATTCCCAGGAAGAGATTGAAACTCAGAACAAATATGTTACAATTAAAACCAACAGATCTAATGGGACAAGGGGTGTTGCTACCCACTATCAAAATGATGGCTCTCCCTTATACCTACTAACACCAAATATTCTGCCTCCTTCCGTAGGTTCTGTGCAAAGATGGCTACTTTGTGATGAGAGAGATGACAAGGATAAACCTCAATGTGCATCTGGACATCTTATTGGACCTAAGCTGAATCAAGATGCTGGTGCTGAAAAGAAGCCTCTATGCATTAACGAAGGACAAACAGAAAGAGTAAAAGCATGCCTAAATGACTCACAAGATATTTCTCAAATATCAGGCCCTGATGGAAAATCAAGTTCAACCCCTTTGAGTCAAAAAGGTTTCCGAGACCCTGCAAGTATTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCTGAATCTAGAGGAGACCTTTTACCTAATCCTCAATTTGATGGTGTCAACATCATAGCTCTTGGTTTTCAGAATGATAGCGATTCTGTTATTGGAGTTGTTGTTCTTTTGCATACTAAATCTGTACCTTTTCAGAGAAGTTTGGATGGTCTATCAGGCTGCAAAATATTGATCTTCACTAATGAGAAGCACTTGTTTAAAGAATTTATAAAGATTGTGTCTTCATCCGACCCAGATATTTTGATTGGTTGGGATATTCAAGGAAGCTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTAATAGTTTGTCTCGCACTCCAACTGATTCTTGTATTACTTCTGAAGATATCAAAACTTCTGAAAAGGGTATGCTGGAACTAGATTTCCCTGATACCCCTAGTGTAGATTGTGGCGTGCAAGAAATTTCAATAATTGAGGATGAATGGGGACGGACACATGCAAGTGGAGTTCATGTAGGGGGAAGAATCGTCCTTAATGTGTGGCGATTGGTCCGCGGAGAGGTTAAGCTAAATTTATATTCAGTTGAAGCCGTAGCTGAAGCTGTATTAAGGCGGAAAATTCCTTTAATTCACCATAAGGTGCTGACAAAATGGTATTCAAGTGGTCCTGGACGAGCAAGATATCAGTGTATCAAATATGTTGTAGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGATTTTTTTTCTGTTCTCTCACGAGGCTCCCAATACCGTGTTGAGTCCATGTTTTTGAGGCTGGCCCATTCACAAAACTACCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCCCTAGTTATGGAACCAGAGTCAGGATTTTATTCAGATCCAGTTGTTGTACTTGACTTCCAATCTTTATACCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTCATGACATCAAAGGCTAATACACTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTGCAGGATTTAAAAGATCAAATCTTGCTCACCCCAAATGGTGTTATGTTTGTACCTAACAAGGTTCGAAGAGGTGTATTGCCCCGCTTATTGGAAGAAATCTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGTCTTCGTCTGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGCCGCATGCCTTGTGCAGAACTTGCGGATAGTATTGTTCAATGTGGCCGCAGAACACTCGAAAGGGCTATATCATTTGTAAATCTGCATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTAAAGGTCGCACTATCAAAGAGTCCTTCCAAATTGGGGGTGAGATTGCTTCTGCTATCACTTCTATGAATCCTAATCCTGTCACCCTGAAGATGGAGAAAGTTTACCATGGATGTTTCCTCCTTACTAAAAAGCGATACGTTGGGTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGACACTGGAGCAGTCTTTGAGACTCTTTTTTGAGCATCAAGATTTATTGGAGGTGAAGACTTACTTGCAACGTCAGTGGAAGAGGATTCTTTCAGGCAGATTCTCCCTCAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGGGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCTACTAAGGCAATGAGGGTTGATCCTAGGGCAGAACCACGTTATGGTGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGGATGAATGATTTATATTACATTAATAAACAAATAATACCGGCTTTACAACGGGTGTTTGGGCTTGTTGGTGCTGACCTGAACCTGTGGTTCGCAGAGATGCCCCGCCCCATAAGGGAAGCTTCTGCAAAGCATACTTTCACTCCAAATTCTCATCGAACCAGAATTGATTATTACTATCTCTCAAAACATTGTGTACTGTGTGGTGCGTTGGTCCAGGCATCAACCCATTTATGTAATCAATGTTCTGAAAATAAAGTTGCAGCTGTGACAGCAGTTGTTTGTAAGACTTCAAAGTTAGAGCAAGAGATGCAACATCTTGTTTCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTCGAAAGTAGTGTGAAGTGCACGTCCATTTCATGCTTGGTGTTCTATGAGAGGCGAAAAGTTCAGAAAGAACTACTAGCTGCCACTCATGCTGCTGGTAAAGGCTTCTATCCGAGATGCACGGTTGAATGGTTTTGA 5247 0.4071 MIPLDWMWSPPSEFDASSNDKAHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTRSDVNMVQSLVPIWEELQKRTGIHGAIMPPDPGKPHPEDVMKLLSVGLDLDKKLFELCSEAETSLFCTPSDKFRETDIIGSASPPASLCKNAKFREEGIDSSLKLLTVDEMQSSEKIGTLDVKVADKDAQNLLKWLATSQAAEDINSDDELVCETILSPLLPAATIDEVLEKASMTYESESQKECQDILDSVDDMLELELPKENPSCSSDHNHPVEASSNSMIPQVDGSNDEEFSRPGASSLAGTSSSVDINSENKRASGHHNHVRHDTDTSNVSKDKKNKQWGSLPFTMTGKVNNDGEHANLYATHPFESETGGYAHSDYLTKNGVRNNACILRNMSKGASDSNEEHGLVSCSLRDLMRRKRSYRVEHDECESGTTKKLLLDRHKGSNTCLWKKQLDLKTMETNEEETELLKNCDPKGSNHNSLVCWKLPLPSGSGSSSQASMSKDECSDQHEMKCLEASMVFRNATNEASSLMPGGLDFHNLENFNFIDSSSIDQSVACCGKNVGNAYAKPVASDANTPNPIIPTQLKTDDPRRSQQTVYAASSSVQSYSIDDKVSAKDNCMDQSSYGSMCFVKHDQTNFYEHAVGISAASDMQVLQSEKVDNQKLGKKLSPETIGSDPIVHDLSIVHDLKGNHVKLIEITRGNNPLADSNLESNMSLPAVFNTHLHLDEDSCHEMPGNALDVFLPISARDSQEEIETQNKYVTIKTNRSNGTRGVATHYQNDGSPLYLLTPNILPPSVGSVQRWLLCDERDDKDKPQCASGHLIGPKLNQDAGAEKKPLCINEGQTERVKACLNDSQDISQISGPDGKSSSTPLSQKGFRDPASIGCGQQLTLLSIEVLAESRGDLLPNPQFDGVNIIALGFQNDSDSVIGVVVLLHTKSVPFQRSLDGLSGCKILIFTNEKHLFKEFIKIVSSSDPDILIGWDIQGSSLGFLAERASHLGLGLLNSLSRTPTDSCITSEDIKTSEKGMLELDFPDTPSVDCGVQEISIIEDEWGRTHASGVHVGGRIVLNVWRLVRGEVKLNLYSVEAVAEAVLRRKIPLIHHKVLTKWYSSGPGRARYQCIKYVVERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHSQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVMTSKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPNKVRRGVLPRLLEEILSTRIMVKQAMKKLSSSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRRTLERAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGGEIASAITSMNPNPVTLKMEKVYHGCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKTLEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYRARISSLPPAAIVATKAMRVDPRAEPRYGERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRMNDLYYINKQIIPALQRVFGLVGADLNLWFAEMPRPIREASAKHTFTPNSHRTRIDYYYLSKHCVLCGALVQASTHLCNQCSENKVAAVTAVVCKTSKLEQEMQHLVSICHHCGGGDRLLESSVKCTSISCLVFYERRKVQKELLAATHAAGKGFYPRCTVEWF* 1749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0294 1748 MobiDBLite consensus disorder prediction 311 333 - -
Lja1g0294 1748 MobiDBLite consensus disorder prediction 576 600 - -
Lja1g0294 1748 MobiDBLite consensus disorder prediction 263 310 - -
Lja1g0294 1748 Pfam DNA polymerase family B 1156 1603 IPR006134 GO:0000166|GO:0003677
Lja1g0294 1748 Gene3D - 1457 1619 IPR042087 -
Lja1g0294 1748 MobiDBLite consensus disorder prediction 857 881 - -
Lja1g0294 1748 SUPERFAMILY DNA/RNA polymerases 1202 1615 IPR043502 -
Lja1g0294 1748 CDD DNA_polB_zeta_exo 887 1137 - -
Lja1g0294 1748 ProSitePatterns DNA polymerase family B signature. 1382 1390 IPR017964 GO:0000166|GO:0003676
Lja1g0294 1748 Gene3D - 914 1198 IPR036397 GO:0003676
Lja1g0294 1748 Gene3D Helix hairpin bin 1281 1341 - -
Lja1g0294 1748 Pfam DNA polymerase family B, exonuclease domain 892 1024 IPR006133 -
Lja1g0294 1748 MobiDBLite consensus disorder prediction 569 600 - -
Lja1g0294 1748 MobiDBLite consensus disorder prediction 857 877 - -
Lja1g0294 1748 Pfam C4-type zinc-finger of DNA polymerase delta 1648 1721 IPR025687 -
Lja1g0294 1748 SMART polmehr3 888 1394 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g0294 1748 MobiDBLite consensus disorder prediction 257 343 - -
Lja1g0294 1748 SUPERFAMILY Ribonuclease H-like 889 1178 IPR012337 -
Lja1g0294 1748 CDD POLBc_zeta 1163 1611 - -
Lja1g0294 1748 Gene3D Palm domain of DNA polymerase 1201 1446 IPR023211 -
Lja1g0294 1748 PRINTS DNA-directed DNA-polymerase family B signature 1215 1228 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g0294 1748 PRINTS DNA-directed DNA-polymerase family B signature 1324 1336 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g0294 1748 PRINTS DNA-directed DNA-polymerase family B signature 1380 1388 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g0294 1748 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 2 1732 IPR030559 GO:0006281|GO:0016035|GO:0019985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0294 Lja-Chr1 2474824 2487702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0294 926 1731 Core DNA Replication Machinery Family AT5G63960 28.690 3.69e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0294 K02350 - gmx:100777934 2595.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0294 1 2474824 2487702 Lja1g0294 1 2474824 2487702 ECH