Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0289 ATGCAAGAGATTTTCGGATCAGTTCGCCGATCACTGGTATTCCGCCCTTCGCCGGACAACGACGACCACTCCTTCGGTGGAGGAGTCGGAGGAACCCTAGTTACTAAGATCACTGACTGCATCCGCAGTTCCAGAGTCTTCTCCTCCTCCAAACCATCGCCGCCGTCTCCGCCTCGCCACAGGGACACCACCGTGCCTCCGATCCGATGGCGCAAGGGCGAATTGATCGGTTGCGGTGCCTTTGGACAAGTCTATGTTGGAATGAATCTCGATTCCGGAGAGCTTCTGGCTGTCAAACAGGTTTTGATTGCAGCAAGTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTCGAGGAAGAAGTAAAACTGCTTAAAGATCTTTCACATCCCAATATTGTTAGATATTTGGGGACGGTTAGAGAAGAGGATAGCTTAAATATTCTCTTGGAGTTTGTTCCTGGTGGATCTATATCATCACTATTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTCATAAGAACTTACACAAAGCAGTTACTGATTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGATATTAAGGGAGCCAACATTCTTGTAGATAATAAAGGCTGCATAAAACTTGCAGATTTTGGGGCTTCAAAACAAGTCGTTGAGCTGGCTACCATTTCTGGTGCCAAGTCTATGAAGGGTACTCCGTATTGGATGGCTCCTGAAGTTATTCTTCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGATGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGCCAGCAATACCAACAGGAGGTTGCTGCTCTCTTCCATATAGGTACAACTAAGTCTCATCCGCCAATCCCTGATCATCTCTCTGTTGCAGCTAAAGATTTTCTGCTAAAGTGTTTGCAGAAGGAACCATATTTGAGGTCATCGGCATCAGAACTGCTGAAGCACCCCTTTGTTACTGGTCAACTTATGGATTCTCCTCCTCTTTCATCTACTGCCATGGAAAGTTCTGGAGCTTCTCCATCACATGACCCAAATGTTGACTCCTTAGTTTGCTGCTCAACAGTAAATCCTGAGGACTCGGAAAATGAAAATTTATGGAGAATGAACAATGATGATGACATGTGTGAGATTGATGATAAAGATGAATTCTCAGAGAGTGATGTCAAATACAAATCATTGATGTCAGATAATATTGAGAGTTTCAATCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCCAGTCCAGAACTGCAAAAAAGCAGAGTTAGTTTTGACACTGATGAAAGTTACATGCCACCTGGTGAGTCAAGTACTGACAAGGGGCAGAAAGATTTTTCCTTTCCTTGTGTGCCATCTTTATCAGAGGAAGATGATGAGCTTACAGAGTCTAAAATTAAAGCATTTTTGGATGAGAAGGCTCTTGACCTGAAAAAACTGCAGACACCATTATATGAAGAGTTTTACAACAGTTTAAATACATGTAGTTCTCCGAATGTGATGGATAGCACAAGTGATGATGCTGCCGCTCGAAAATTCTTGAAGTTACCTCCTAAAAGCAAGTCACCGAGTCGGGTCCCAAGTAGCACACAGTCTAAAGCAGTTGACAGTGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCATCAACTGTTTGTAGTGTCAATAACCATGGTTCACAGGATATCCCGGCATCGCCCCTTGGTGAATGGAAAGGAAAGATAGTTGACTCCCAGAAGGAGCCCAATAGCCCGAGTTTGAACTTCTCTGAAAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGTATGGGGGGAAAGACATCTTCACCAAAGGATCGAGCATTACGGCCGAGAGAGCGGACAAGATTTGCTTCTCCCAGCTAA 1968 0.4522 MQEIFGSVRRSLVFRPSPDNDDHSFGGGVGGTLVTKITDCIRSSRVFSSSKPSPPSPPRHRDTTVPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDSLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLIGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPYLRSSASELLKHPFVTGQLMDSPPLSSTAMESSGASPSHDPNVDSLVCCSTVNPEDSENENLWRMNNDDDMCEIDDKDEFSESDVKYKSLMSDNIESFNPMSDPSDDWGCKFDASPELQKSRVSFDTDESYMPPGESSTDKGQKDFSFPCVPSLSEEDDELTESKIKAFLDEKALDLKKLQTPLYEEFYNSLNTCSSPNVMDSTSDDAAARKFLKLPPKSKSPSRVPSSTQSKAVDSAGSPGSNGRSSSTVCSVNNHGSQDIPASPLGEWKGKIVDSQKEPNSPSLNFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALRPRERTRFASPS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0289 655 ProSiteProfiles Protein kinase domain profile. 70 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0289 655 MobiDBLite consensus disorder prediction 442 461 - -
Lja1g0289 655 MobiDBLite consensus disorder prediction 338 358 - -
Lja1g0289 655 SUPERFAMILY Protein kinase-like (PK-like) 50 354 IPR011009 -
Lja1g0289 655 Coils Coil 608 628 - -
Lja1g0289 655 CDD STKc_MAPKKK 69 331 - -
Lja1g0289 655 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lja1g0289 655 MobiDBLite consensus disorder prediction 45 65 - -
Lja1g0289 655 Pfam Protein kinase domain 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0289 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Lja1g0289 655 MobiDBLite consensus disorder prediction 538 578 - -
Lja1g0289 655 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 612 - -
Lja1g0289 655 Coils Coil 101 128 - -
Lja1g0289 655 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 612 - -
Lja1g0289 655 MobiDBLite consensus disorder prediction 606 628 - -
Lja1g0289 655 SMART serkin_6 70 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0289 655 Gene3D Transferase(Phosphotransferase) domain 1 69 360 - -
Lja1g0289 655 MobiDBLite consensus disorder prediction 531 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0289 Lja-Chr1 2400896 2405967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0289 1 654 MAP Kinase Kinase Kinase AT1G54960 56.978 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja1g0289 Pkinase 4.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0289 K20606 - gmx:100807537 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0289 1 2400896 2405967 Lja1g0289 1 2400896 2405967 ECH