Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0273 ATGGATCATCAAGGGCATGGCCAGAACCCATCCATGGGGGGTGTCGGTAGCGGAGGTCAACTGACGTATGGTTCTAACCCATATCAGCCAAACCAAATGACCGGGGCACCAGGAGCGGTTGTCACATCTGTTGGGAACATGCCATCCACCGGTCAACCTGCTGGAGCTCAGATGGGGCAGCATCAGCTTGCTTATCAGCATATTCATCAGCAACAGCAGCAGCAACTTCAGCAACAGCTCCAAGCCTTCTGGGCAAATCAATACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTCGAATGATATCAGCTGAGGCACCGGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACTCTCCAGAAAAATGATATCGCTGCAGCAATTACTAGGACTGATATCTTTGACTTCTTGGTTGACATAGTGCCTCGCGAGGACCTGAAAGATGAAGTGCTCGCATCAATCCCAAGAGGATCAATGCCTGTGGCTGGGCCTGGTGACGCGCTTCCTTATTGCTACGGCATGCCTCAGCAAGTTGGACCTGCTGGTGTCATAATGGGAAAGCCTGTGATGGATCCAAATATGTATGCTCAGCAATCTCATCCTTACATGGCACCCCAAATGTGGCCTCAGCCACAAGACCAGCAGCGACCACCATCTCCAGATCAGTAG 777 0.4929 MDHQGHGQNPSMGGVGSGGQLTYGSNPYQPNQMTGAPGAVVTSVGNMPSTGQPAGAQMGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGSMPVAGPGDALPYCYGMPQQVGPAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPQDQQRPPSPDQ* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0273 258 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 255 - -
Lja1g0273 258 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 255 - -
Lja1g0273 258 MobiDBLite consensus disorder prediction 10 58 - -
Lja1g0273 258 SUPERFAMILY Histone-fold 59 173 IPR009072 GO:0046982
Lja1g0273 258 MobiDBLite consensus disorder prediction 1 58 - -
Lja1g0273 258 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Lja1g0273 258 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Lja1g0273 258 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0273 Lja-Chr1 2334726 2337681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0273 1 244 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.484 3.03e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja1g0273 CBFD_NFYB_HMF 5.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0273 K08066 - gmx:100527803 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0273 1 2334726 2337681 Lja5g1485 5 15629612 15632979 ECH
Lja1g0273 1 2334726 2337681 Lja1g0273 1 2334726 2337681 ECH
Lja1g0273 1 2334726 2337681 Lja5g1485 5 15629612 15632979 PCT