Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0272 ATGGCCTTCATTCCAATTCCCTCTTCCTCTTTCTCTTTCAAATCTTCATCATCACTCTCACTCTCACTTTCACTCTTCATCTTCGTCTTCATATTCAAACTAAACCTACCCTCTCTCATAACCACCACCACCACTTCAAACCCTCCACGCAGATCAACCCTCACTGTTCAATCATCATCTTGCTCCAATGGAGGAAGAGATGAAGGAATCGTCAACTACCACTGCATCTTCCCCAACACCCCATCCCTCTCAATCCCAACCCTCTCCCTCTTCCTCCTCCTCCATTTCTACATCCTCATCCAAACCGCCCAGCACCACTTCTCCCTCATCACCACAAAACTCGCCTCTCACCTCAACCTCTCCCCTAGCATGGCCGCCGTCACACTCCTCTCCCTCGGCAACGGCTCCCCCGACGTCTTCTCCTCCCTCGCCGCCCTCCGCGCCGGACAATACCGCACCGGCTTCGGCGCCATACTCTCCGCCGGCGCGTTCGTCTCCGCTCTCGTCGTCGGCTTCGTCGCCATCTACGCCGCTCCGTTTTCCCTCGATCCTGCTCCGTTTATCCGGGATCTGCTGTTCTACCTAACCGCCGCGTTGTTCCTCTTCTACGTGTATCTCAGTGCGGAGATTTTCCTCTGGCAAGCCGTTGGATTCGTCGCGTTCTACCTCTTTTTCGTTGGTTTTGTGTTCTACATGGATCTAGGGATTGTAGATCGCAAAGAGAGGAGTTCTTCCGATCTCGAGGGACAACGGCAATTGGATTACGACTACAACGCTTCAGAATCTCCCCCGGAGGTGAAACGCGCTTCTGGATTTCACTCACCTTTTCATTTGATTTCTAAAATATGGGGGCTTCCTGTCTCAACTCTCTTAAGATTGACAATCCCTCAACCAGCACCATCGCAATGGAGCAGATTTTATGCATCAGCCAATATCGCTCTTTGTCCACTAGCCCTCTTGTATGCCTGCAACTCATTCGTCCCATTGAATCATCCCATAGTTTTCCTCCTCCCCAACACTCATTTACCCCTCTGGTCAGTAGTGCTCGTAACAAGCTTCCCTCTTGCATTTCTCCATTTTGTGATGGAAAAAGAACCCCCAAAAACTGAGCATTTACCAGTGGTGATCATAGCATTTGTTATGAGCGTGTTTTGGATATCTACTACAGCTGGAGAGCTGGTGAACTGCCTTGAAGCTCTAGGTACGCGTCTCAAACTGCCACCATCACTCCTAGGTCTTACGGTGCTGGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCAGGTCATCCAGCTATGGCAATGGCCGGTTGCTTTGCCGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGGTCAATATATATCCTAGAGCGTATGAGCTTAGTTTCCACGTTGGTATAGTCATTGCATTTGTTTTTCTGCTTTTGAGCCTCATGGGGTCTCTCTTGGTGATCACTTGGTGCAGATTCAGAGTGCCTAGGTTTTGGGGTTTCTGTCTGGTAGGGCTCTATATTGCTTTTACAGCAGTGAGTTTGATAGTAGCAATGTTTTCAGGGTGA 1599 0.4959 MAFIPIPSSSFSFKSSSSLSLSLSLFIFVFIFKLNLPSLITTTTTSNPPRRSTLTVQSSSCSNGGRDEGIVNYHCIFPNTPSLSIPTLSLFLLLHFYILIQTAQHHFSLITTKLASHLNLSPSMAAVTLLSLGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFSLDPAPFIRDLLFYLTAALFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGIVDRKERSSSDLEGQRQLDYDYNASESPPEVKRASGFHSPFHLISKIWGLPVSTLLRLTIPQPAPSQWSRFYASANIALCPLALLYACNSFVPLNHPIVFLLPNTHLPLWSVVLVTSFPLAFLHFVMEKEPPKTEHLPVVIIAFVMSVFWISTTAGELVNCLEALGTRLKLPPSLLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTVNIYPRAYELSFHVGIVIAFVFLLLSLMGSLLVITWCRFRVPRFWGFCLVGLYIAFTAVSLIVAMFSG* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0272 532 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 67 257 - -
Lja1g0272 532 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 276 531 - -
Lja1g0272 532 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 67 257 - -
Lja1g0272 532 Pfam Sodium/calcium exchanger protein 376 525 IPR004837 GO:0016021|GO:0055085
Lja1g0272 532 Pfam Sodium/calcium exchanger protein 89 230 IPR004837 GO:0016021|GO:0055085
Lja1g0272 532 Gene3D - 308 526 IPR044880 -
Lja1g0272 532 Gene3D - 120 245 IPR044880 -
Lja1g0272 532 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 276 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0272 Lja-Chr1 2325450 2328825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0272 16 531 Antiporters AT1G08960 66.667 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0272 K13754 - gmx:100775437 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0272 1 2325450 2328825 Lja1g0272 1 2325450 2328825 ECH