Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0268 ATGGAAAGAAAATCTCAAACACTCTCCCTTCTCCTCCTCCTAATCTCGCCGTCGATCCCCCTCGCCGCCGCACAGTCCCCAAACACAAACCAAACCGTAGACCCCGATTTCAAAGAATTCAACCCTTCGTTTGCTATAATCATCGTCATACTCGTCGCTGCTCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGTCAGTGCGCCGATTCAAACCCCAACAGCGTCCTCCCCATCACCCACGCGCGCTCCCGGAGGGTGGCGCGTGGCCTCGACCAAACCGTCATCGACACGTTCCCTGTCCTGGAATACTCCGAGGTCAAAGCACACAAGATCGGAAAGCACGCGCTCGAGTGCGCCGTTTGCTTGAGCGAATTCGAAGACGCTGAAACGCTGCGTTTGATCCCAAAGTGCGACCATGTTTTCCACACCGAGTGCATCGACGAGTGGCTGGTTTCTCACACCACCTGCCCCGTTTGCCGTGCGAATCTCTCCCCTCAACCCGCCGAGTCAGTTCACGGAGCCACCGTGCCGGAATCGCAAGACGACGTCGAGGCGCAAAACGACGCCGTTCCGGTCCAGTCCGATCTAGAGCAGCAAAACGTTGACGTTGACCGGGTATTACCGGAACCAGAGGTGATCTCAATAGGTAAAACCCTGAACCGGAACCGGACTAGAGGCTCCCGGTCGAACCGGCCTTGGCATTTCCCGCGTTCGCACTCGACCGGTCATTCGCTGGTTCAACCAGGTGAGAACACGGAGCGGTTCACCTTGAGGCTCCCGGTTGGGGTGAGGAAGCAGATAATGGACCGGCAGTTGCAGCGTGCTAGTAGTTTGATTGTGTTACCTAGGGAAGGTAGCTCGAGAGTGGGTTACCGGACCGGCGGCAATGGTAGCAGTAGGGGGAAGGCTTCGAGGCGGTTGGACCAGGGGTCTAAATCGGACCGGTGGGTTTTCTCAAAGGCTCCCTCGTTCTTGATGAGGGCATTGTCGATTAGATCCCCGCGGCCGAGGACGCGGAATAGCGACGATGAAGCGTCGTCCTCGGCCGCGCCTATCATGCCGCTGGGAGCCAGTGATTCCGCCCGCCCTCCTCCGGTTTAA 1104 0.5779 MERKSQTLSLLLLLISPSIPLAAAQSPNTNQTVDPDFKEFNPSFAIIIVILVAALFLMGFFSIYIRQCADSNPNSVLPITHARSRRVARGLDQTVIDTFPVLEYSEVKAHKIGKHALECAVCLSEFEDAETLRLIPKCDHVFHTECIDEWLVSHTTCPVCRANLSPQPAESVHGATVPESQDDVEAQNDAVPVQSDLEQQNVDVDRVLPEPEVISIGKTLNRNRTRGSRSNRPWHFPRSHSTGHSLVQPGENTERFTLRLPVGVRKQIMDRQLQRASSLIVLPREGSSRVGYRTGGNGSSRGKASRRLDQGSKSDRWVFSKAPSFLMRALSIRSPRPRTRNSDDEASSSAAPIMPLGASDSARPPPV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0268 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 167 IPR013083 -
Lja1g0268 367 PANTHER RING FINGER DOMAIN-CONTAINING 4 307 - -
Lja1g0268 367 MobiDBLite consensus disorder prediction 234 252 - -
Lja1g0268 367 SMART ring_2 119 160 IPR001841 -
Lja1g0268 367 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Lja1g0268 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 307 - -
Lja1g0268 367 Pfam Ring finger domain 118 161 IPR001841 -
Lja1g0268 367 CDD RING-H2_EL5_like 118 161 - -
Lja1g0268 367 MobiDBLite consensus disorder prediction 330 367 - -
Lja1g0268 367 MobiDBLite consensus disorder prediction 217 252 - -
Lja1g0268 367 MobiDBLite consensus disorder prediction 288 314 - -
Lja1g0268 367 SUPERFAMILY RING/U-box 118 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0268 Lja-Chr1 2288032 2289552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0268 8 329 Rapid Response to Elicitors AT3G05200 50.000 2.55e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0268 K10664 - gmx:100781706 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0268 1 2288032 2289552 Lja1g0268 1 2288032 2289552 ECH
Lja1g0268 1 2288032 2289552 Lja5g1491 5 15692594 15693992 PCT