Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0267 ATGGCATTAGAAGCAGTAGTGTATCCACAACCACAAGACCCGTTTGGTTATGGAATTAAAGACCACAACTTGTTAGCAGATGTTGAATTAAGCAACTGGGGCTACGAGGATTTCAACTTAAACCTTGAAAATGAACAACAACAAGGTGGTTCTATTTCTATCTGCAGTTTTCTCGAGAACCAAACAGAAAATTACCCTTGTGTAGATTGGAGTCCACAATCCATGGAAGTGGAACTACCACACAAGAATGAGCAGAACATGTCAAATCCATCTTCAGATGCCAGCAACTGCAACACTCACAACTTAGATAGCTCAACTTCAACCCCTTCTCCTCCCAAGAGGCGCAGAGCCAGAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGAAAGCAATTGAATGAGTATCTCTCTGTTCTTCGCTCAATCATGCCTGAATCTTATGTCCCAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATTAATTTTGTTAAGGAGCTTGAGCAGAAGCTGCAATTTCTAGGTGTTCAGAAAGAAAAGGAGGGGAAATCTGATGTAATGGCAATTGCAAATGCAAATTCAAATAAGCCCTTTTCTGAGTTCTTCACCTTTCCACAGTACTCAACAAGTGGTGGTAGTGGCTGTGAAACTTCCACAGGCAAGGGTGAACAATTGAGTGCAGTTCAATCTGGGATTGCTGACATTGAAGTGATAATGGTGGAGAGCCATGCAAATCTCAAGATAAGATCCAAGAAATTTCCAAAGCAGCTCTTGAAGATGGTCTCTAGTTTGCATGGTATGCGTCTCACAATCTTGCACCTGAATGTCACTACCACTGGAGAAATTGTCTTATACTCTATCAGTGTTAAGGTGGAAGATGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTATATATCAAATGCTGGATAGGATTCAACAAGAGTCAAATTTGAACTAA 1002 0.4162 MALEAVVYPQPQDPFGYGIKDHNLLADVELSNWGYEDFNLNLENEQQQGGSISICSFLENQTENYPCVDWSPQSMEVELPHKNEQNMSNPSSDASNCNTHNLDSSTSTPSPPKRRRARSRKNKEEIENQRMTHIAVERNRRKQLNEYLSVLRSIMPESYVPRGDQASIIGGAINFVKELEQKLQFLGVQKEKEGKSDVMAIANANSNKPFSEFFTFPQYSTSGGSGCETSTGKGEQLSAVQSGIADIEVIMVESHANLKIRSKKFPKQLLKMVSSLHGMRLTILHLNVTTTGEIVLYSISVKVEDDCKLGSVDEIAAAIYQMLDRIQQESNLN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0267 333 MobiDBLite consensus disorder prediction 83 112 - -
Lja1g0267 333 SMART finulus 134 185 IPR011598 GO:0046983
Lja1g0267 333 PANTHER MAX DIMERIZATION, MAD 1 333 - -
Lja1g0267 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 179 IPR011598 GO:0046983
Lja1g0267 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 191 IPR036638 GO:0046983
Lja1g0267 333 Pfam Helix-loop-helix DNA-binding domain 129 180 IPR011598 GO:0046983
Lja1g0267 333 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 333 - -
Lja1g0267 333 Gene3D - 114 194 IPR036638 GO:0046983
Lja1g0267 333 MobiDBLite consensus disorder prediction 83 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0267 Lja-Chr1 2269786 2271471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0267 1 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 42.633 4.50e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g0267 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0267 - - lja:Lj1g3v4954920.1 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0267 1 2269786 2271471 Lja1g0267 1 2269786 2271471 ECH
Lja1g0267 1 2269786 2271471 Lja5g1493 5 15748381 15750916 PCT