Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0255 ATGGCAAATGATGGGAGAGATTATTGCTTATGGAACCCTAATATTAAACACAAAAAACAAGGCCTTTTGCTACCGCGCCGTGCTTCTCCTCAAGACTTGAGAGGTTATTTGGAGAAAGAGAAAGAAGAGGATTCATCTGCTGAAGACTGCATTAGAGACTCTCAGTCACCTGAATTGGTGGCTACTGCTGGTTGTTCAAGCCTAAGACCTCCATTTCGCAAGTGCTTTAAACTATGGAAGAAAAGATCAATTAAGAACCTAACTTCCTTGCAACCTTGTTGTGTGCCAAACATGACAGAATCTAAAAACATAAGCATTGCAGAAAGTCCTGTTTTATGTAATCTTTACAACTTCAGGTCCTCTTTGGTTAATTTCAGCCTCTCTGACCTGAGAAATGCAACCCACAATTTCAGCAGAGGAAATTTAATTGGAAGAGGTGGCTATGCTGAGGTTTTCAAGGGCTGCCTTCGAGACGGGCAATTAATCGCGGTTAAGCGACTGATCAGAGGAACTTTAGAAGAGATAACATCAACCTTTCTATCTGAGCTAGGCATTATTGCTCATGTTAACCATCATAATACTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGGAATGCACCTTGTTTTCGAACTATCACCATTGGGAAGTTTAGAATCTCTTATTCATGGTTCAAGTTCAACTAGGCAGAAATTGGATTGGAGCAAAAGGTATAGAATCATTACGGGGATAGCCGATGGACTCCTATATCTTCATGAGAGTTGTCCAAGGCGAATCATTCATAGAGATATTAAAGCAGAAAACATTCTGCTCACTGAGAATTTTGAACCACAGATTTGTGATTTTGGGCTAGCAAAGTGGTTACCAGACCAATGTACTCACCATAATATATCAAAATTTGAAGGCACATTCGGGTATTTTGCTCCTGAATATTTGATGCATGGCATAGTAGACGAGAAAACTGATGTGTATTCCTTTGGTGTCCTACTTTTGGAGATTATAACTGGGCGTCGCGCTTTGGATGATCTCAATCAAAGTCTTGTGTTATGGGCAAAGCCTTTGCTTGATGCTAACGATATAGAGTACCTTGCTGATCCTGCTCTTGGTGGTGATTATGACCGGCAACAAATGAATCGCGTTGTTTTGACTGCATCTTTGTGTGTTGAGAGGTCTCCCATCTTAAGACCCCTCATGAGTCAGGTTGCAGTATTGCTGAGAGGTGATGACTATGTCCTGGAAACTCCAAGAGCAAGCCAAAGGCGGACTCTCCGAAGAGCATTCGCAATGGAGCAAGGATACAACTCACCAAACAATTTCAGTTATCAGAATCGACATAAGCAAGTTGCCTTGGGTTCTTGA 1359 0.4165 MANDGRDYCLWNPNIKHKKQGLLLPRRASPQDLRGYLEKEKEEDSSAEDCIRDSQSPELVATAGCSSLRPPFRKCFKLWKKRSIKNLTSLQPCCVPNMTESKNISIAESPVLCNLYNFRSSLVNFSLSDLRNATHNFSRGNLIGRGGYAEVFKGCLRDGQLIAVKRLIRGTLEEITSTFLSELGIIAHVNHHNTAKLIGCGVEGGMHLVFELSPLGSLESLIHGSSSTRQKLDWSKRYRIITGIADGLLYLHESCPRRIIHRDIKAENILLTENFEPQICDFGLAKWLPDQCTHHNISKFEGTFGYFAPEYLMHGIVDEKTDVYSFGVLLLEIITGRRALDDLNQSLVLWAKPLLDANDIEYLADPALGGDYDRQQMNRVVLTASLCVERSPILRPLMSQVAVLLRGDDYVLETPRASQRRTLRRAFAMEQGYNSPNNFSYQNRHKQVALGS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0255 452 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Lja1g0255 452 SMART serkin_6 137 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0255 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Lja1g0255 452 Gene3D Phosphorylase Kinase; domain 1 97 211 - -
Lja1g0255 452 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 3 428 - -
Lja1g0255 452 Pfam Protein kinase domain 138 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0255 452 SUPERFAMILY Protein kinase-like (PK-like) 119 415 IPR011009 -
Lja1g0255 452 Gene3D Transferase(Phosphotransferase) domain 1 214 418 - -
Lja1g0255 452 ProSiteProfiles Protein kinase domain profile. 137 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0255 452 PANTHER OS08G0249100 PROTEIN 3 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0255 Lja-Chr1 2182893 2186851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0255 122 429 Receptor kinase-like Gene Family AT1G53420 39.815 1.20e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja1g0255 Pkinase 5.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0255 - - cam:101512181 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0255 1 2182893 2186851 Lja5g1504 5 15817684 15820816 ECH
Lja1g1177 1 12065419 12071703 Lja1g0255 1 2182893 2186851 ECH
Lja5g1102 5 11064267 11068326 Lja1g0255 1 2182893 2186851 ECH
Lja6g2793 6 57017080 57020081 Lja1g0255 1 2182893 2186851 ECH
Lja1g0255 1 2182893 2186851 Lja1g0255 1 2182893 2186851 ECH
Lja1g0255 1 2182893 2186851 Lja5g1504 5 15817684 15820816 PCT