Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0249 ATGGAGTGCAACAAGGACGAAGCTCTGAGGGCAAAGCAAATAGCTGAAAATAAAATGCAAAGTGGTGACTTTGAAGGGGCATTGAAGTTTGCTACGAAAGCCAAACGACTGTTTCCTGAGGTTCAGAACATTGCTCAGATTCTTACTGTTTGTGAGGTTCACTGTGCTGCACAGAACAAGCTCTCTGGGTCCAACATGGACTGGTATGAAATTCTTCAGACTGAACGATTTGCTGATGAAGTTACTATAAAGAAACAATATAGGAAGCTGGCACTGCTGCTTCATCCGGATAAAAATAAGTCTGCCGGGGCAGAGGCTGCTTTCAAGTTGATTGGGGAAGCTAATAGAACTTTGAGTGACCAAACAAAGCGTTTTGCATATGATTCAAGGATCAGAGGCCTTGTGGGAACAACTGTACCTCCGAGTCAGCGGTTTTGGACATATTGCCCACACTGTACTACTAGGTATCAGTACAGCAAAACTGCTTTGAATGTTACGATGCGATGCCGACAATGTATGGAGTCCTTTACAGCTCATGATATGGGAGACCCGAGTGCATCACCATGGCCACCATCTACTAACCATAAGGAGCCTTCGAAGCATGTGCCACCAAAAGAAGCATCAAAAAATAATGGGGGAAAACCTTCTGTTAGAGGACCGATGGATAAGTTTGTGCGGTCTTCTCCTGTGTCTATGTCGAAATGTACTGCTGGAGTTGGTGTCTCTCACAAAGTTGAAACGAGCCATGTGACTGCAGGATTGACAAAGGCTAGTGTTGGAACTTCCAAACCTGGTACATCCAAAGCCAAGGAATCCCAAACCCCGAAAAATGTTGGAAGTAAGAGAGCAAGGCAGTCAGCATCAGATTCGAGAGATGATCGCAAGGCTGAAAATGTTAATGGCATGAAAGATACCAATGTTCAAGAAAACGGTGCTGATCCTTCTGGGCTTGATGCAGGAGTTCATCGTAGAAAATCTTCCAGGAAAAAACAGCGTGTTTCGTACACAGCTGAAGGTGGTGATAGTCAGAGTTCTTCCAAAAGGTCACGGCTACATGAATCATTTAATATCGGTGAAGTTGGGAGAAAAGAAGTGCCTGCTAATGGTGGGTTGTTCAGTAATAGTAATCCAGCTAGTTTCACTGCAGGCGTGGCTGGTCAGAATGGAGAGATGAGAAATGAAGTAAGTGCCCCACCTGAAGAATCAGTTTTAAAGAATAAAAGGAAAATTGAGCAGTCCAATTTGCAAATAAAGGAGGGATCCAAGTCAGATGTTGATGATAGAAAGCCCAAAGCTGACAGATGTTCTCCACCTAATTCAAATTCGCCTTCCAATGTTGAGATCTCCTGCCCTGATCCAGATTTCAGTGATTTTGAGAAGGATAGGGCGGAGGATTGTTTTGCTGCTAGTCAATTCTGGGCTATTTTTGATGATATTGATAGTATGCCAAGATTCTATGCTCTTATCCGGAAAGTCTACTCACCTTTCAAGTTGCACTTTACTTGGCTTGAAGCTGACTCAGATGATCAAGGTGAGATTGATTGGCATGATGCAGGTTTACCTGTTGCCTGTGGTAAGTACAAACTTGGTAAATCTCAGAGAACTACAGATCGTGCTATGTTCTCTCACCAGATCCGCTGCATAGAAAGAAGCGACATAGGTTCTTATCTGGTTTATCCCAAGAGGGGAGAGACTTGGGCTATTTTCAGTGATTGGGATATTGGATGGAGCTCTAATCCAGAAAATCATTCTGAATATCAATTTGAGTATGTGGAAGTCGTATCTGATTTTGATGAGAATATTGGTATTCGAGTTTCTTATCTTGGCAAAGTGAAAGGGTTTGTTAGTCTCTTTCAGGAATCTGTGCAGAACGGACTTAGGTTATTTTGCATTCCACCTAACAAGCTTTACAGGTTTTCACATCGGATTCCATCATATAAGATGGATGGTAATGAAAGGGAAGGTGTTCCAAGAGGATCTTTTGAACTTGATCCTGCTGGTCTTCCTCTTAGTCTTTTTGAAGCAGGTGATTCTGGTTATGCGAAGATGGAGTCTGGAGTGCTAAACAATGGAGTCAATGCTTCAAGTCACAAATCTTCCATGTCTGAAGCTGAACAGGCAATGTCTAATGAGGGTACTCACAAAGCAAAGTTGCGGGAGAGTAATGCTGCTGGAAGAGTCTCGCAAATCCTTAGAAAATCACCAAGGTCAAATGTAAAAAGTATGAATAATGTTCAAGGTAGCACTAGTCAGAATATGGTAAGAGAGAATGACAAAGACATTGGCCACAGGGACTACAGTCAACCGGAGGGATTCCAGACTCATGACAAAACTCCACTAAAACATGATACAAATAATCATGGTAATGAGACATTGAAAGTTCGAAGGTCAACAAGAGCTTTGAGCAAGAAAACTCATTTAGGGGATGCAGGTGATTGTTCAGACACTGATAAAAACATGAAGGACTCCGTATTTTCTGAGCCAGATGGAAGTGATCGTGCATTTTCGAAAAAAGATTGCAGTGTGGGAGCATCTTGTTATGACTTCAAGAAGGAAAAATCTAGGGAGATGCTTCAGTGTGATCAGATATGGGCAATCTATGGTGATCGGGATAATATGCCCCATTATTATGCTCAAATTAAGAAGATTGAATCCACCCCTCTCTTTAGATTGCATGTGTCTGAACTTGAACCATGTTTGCCACCTAAAGAGTTAAAACGAACAGTATCTTGTGGTACCTTCAAAGTTAAAAAAGCCAAATCACAGGTTCTTTATGTCTCTGCATTCTCTCACCAACTAGAAGTGGAGCCCATGTCAGATAACAAATATGAAATTTACCCTAGAAAAGGTCAGATTTGGGCTCTGTACAAGGATCAGAACTATGAAGTGACTTCTTCAGGCCAGGGCAGAGGTGAATGTCATATTGTAGAAGTATTAGCAGATAGTGACAGGAGTATAGAAGTTGTCGTTCTGAAGCCTCTCTCTCTCAACAGCTCTCAGCCAATTTTCAAGGCTCCTAGAATCCAGAGATCTAAGACTGGTATATATGAGATATCAAGAGAAGAGGTTAGTAGATTTTCACATCAGATTCCTGCTTTTCAGCACACCGGGGAAGGCGATCTCCATCTCAGAGGCTGTTGGGTGCTGGATCCTTCTTCAGTTCCTGGTTTTGTCATTCAAGTAGACTGA 3189 0.423 MECNKDEALRAKQIAENKMQSGDFEGALKFATKAKRLFPEVQNIAQILTVCEVHCAAQNKLSGSNMDWYEILQTERFADEVTIKKQYRKLALLLHPDKNKSAGAEAAFKLIGEANRTLSDQTKRFAYDSRIRGLVGTTVPPSQRFWTYCPHCTTRYQYSKTALNVTMRCRQCMESFTAHDMGDPSASPWPPSTNHKEPSKHVPPKEASKNNGGKPSVRGPMDKFVRSSPVSMSKCTAGVGVSHKVETSHVTAGLTKASVGTSKPGTSKAKESQTPKNVGSKRARQSASDSRDDRKAENVNGMKDTNVQENGADPSGLDAGVHRRKSSRKKQRVSYTAEGGDSQSSSKRSRLHESFNIGEVGRKEVPANGGLFSNSNPASFTAGVAGQNGEMRNEVSAPPEESVLKNKRKIEQSNLQIKEGSKSDVDDRKPKADRCSPPNSNSPSNVEISCPDPDFSDFEKDRAEDCFAASQFWAIFDDIDSMPRFYALIRKVYSPFKLHFTWLEADSDDQGEIDWHDAGLPVACGKYKLGKSQRTTDRAMFSHQIRCIERSDIGSYLVYPKRGETWAIFSDWDIGWSSNPENHSEYQFEYVEVVSDFDENIGIRVSYLGKVKGFVSLFQESVQNGLRLFCIPPNKLYRFSHRIPSYKMDGNEREGVPRGSFELDPAGLPLSLFEAGDSGYAKMESGVLNNGVNASSHKSSMSEAEQAMSNEGTHKAKLRESNAAGRVSQILRKSPRSNVKSMNNVQGSTSQNMVRENDKDIGHRDYSQPEGFQTHDKTPLKHDTNNHGNETLKVRRSTRALSKKTHLGDAGDCSDTDKNMKDSVFSEPDGSDRAFSKKDCSVGASCYDFKKEKSREMLQCDQIWAIYGDRDNMPHYYAQIKKIESTPLFRLHVSELEPCLPPKELKRTVSCGTFKVKKAKSQVLYVSAFSHQLEVEPMSDNKYEIYPRKGQIWALYKDQNYEVTSSGQGRGECHIVEVLADSDRSIEVVVLKPLSLNSSQPIFKAPRIQRSKTGIYEISREEVSRFSHQIPAFQHTGEGDLHLRGCWVLDPSSVPGFVIQVD* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0249 1062 SMART dnaj_3 66 123 IPR001623 -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 435 449 - -
Lja1g0249 1062 PRINTS DnaJ domain signature 69 87 IPR001623 -
Lja1g0249 1062 PRINTS DnaJ domain signature 103 123 IPR001623 -
Lja1g0249 1062 PRINTS DnaJ domain signature 87 102 IPR001623 -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 252 284 - -
Lja1g0249 1062 Pfam DnaJ domain 67 128 IPR001623 -
Lja1g0249 1062 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 706 1060 - -
Lja1g0249 1062 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 679 - -
Lja1g0249 1062 CDD DnaJ 67 120 IPR001623 -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 765 819 - -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 180 234 - -
Lja1g0249 1062 PANTHER - 706 1060 - -
Lja1g0249 1062 PANTHER - 1 679 - -
Lja1g0249 1062 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 401 434 - -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 285 300 - -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 369 383 - -
Lja1g0249 1062 Gene3D DnaJ domain 53 137 IPR036869 -
Lja1g0249 1062 Pfam Domain of unknown function (DUF3444) 446 652 IPR024593 -
Lja1g0249 1062 Pfam Domain of unknown function (DUF3444) 845 1038 IPR024593 -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 345 359 - -
Lja1g0249 1062 MobiDBLite consensus disorder prediction 252 450 - -
Lja1g0249 1062 SUPERFAMILY Chaperone J-domain 61 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0249 Lja-Chr1 2136881 2142316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0249 4 276 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.836 9.42e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0249 - - aprc:113861153 1405.96