Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0248 ATGGAATGCAACAAGGAAGAAGCTCTGAGGGCGAAGCGAATAGCTCAAAATAGAATGCAAAGCGGTGACTTTGTAGGGGGACTCAAGTTTGCTATGAAAGCCAAACAAATGTTTCCGGAGACTCAGAACATTGCGCAGATCCTTGCTGTTTGTGAGGTTCATTGTGCTGCACAGAACAAAGTCTCCGGGTCTGACATGGACTGGTATGGAATTCTTCAGACTGAACCATTAGCTGGTGAAGTTACTATAAGGAAACAATATAGGAAGCTGGCACTGCTACTTCATCCTGACAAAAATAAATCTCCTGGGGCGGAGGCTGCTTTCAAGTTGATTGAGGAAGCTAACCGATTTTTGAGTGACCAAATAAAGTGTTCTTCATATGATTTGAGGATCACAGGCCCTTTGAGGACTACATTTTGGACACATTGCTCACACTGTAAAACTAGGTACCAGTACTACAAAACCGTTATGAATGCTAAGTTGCGATGCCAACAATGTGCCAAGTCCTTTAGAGCCTATGATATCGCATACCAGGACGCATCACCTGGATATACACGGTCATCATCTGATAACCATAAAAAGCCTCCAAAGCATGTGCCACCAAAAGAAGCATCAAAAAGTAATGGGGGGAAACCTTGTGGTAGAAAGCCGAGGGATAGGTTTGGGCGGTTTACTCCTGTGTATATGTCAAAACGCACTGCTGGAGTTGCTAAAGTAAGTGCCCCACCTGAAGAATCAGTTTTAGAGAATAAAATGAAAATTGCGCGGTCAAGTTTGCAAAGAAAGGAGGGCTCCAAGTCAGATGTTGGTGATAGAGAGCCCAAATCGAGCAAATGTTCTCCGCTTAATTCAAATTTGCACTCCCATGCTCGAAATCCCCCTCAGCGTGATGAACTGCGAACTTTTTGGACATATTGCCCACACTGTAAAACTAGGTACCAGTACTGCAAAAACGTTATGAATGCTAAGTTGCGATGCCAACAATGTACCAAGTCCTTTAGAGCCTACGATATGGCATACCAGGACGCATCACCTGGATATACACGGTCATCATTTGATAACCATAAAGAACCTCCAAAGCATGTGCCACCAAAAGATGCATCAAAATGTGATGGGGGGAAACCTTGTGGCAGAAGGCTGAGGGATAAGTTTGGGCGGTTTTCTCCTGTGTCTATGTCAAAACGCACCTCTGGAGTTGCTAAAGTAAGTTTCCCACCTGAAGAATCAGTTTTAGAGAATAGAATGAAAATTGAGCAGTCAAGTTTGAAGAGAAAGGAGGCCTCCAAGTCAGATGTTGATGATAGAGAGCCCAAATCGAGCAAATGTTCTCCACTTAATTCAAATTTGCATCCCAATTTTGAGATCTGGTACCCAGATCCAGAATTCAGTGATTTTGAGAAGGATAGGGCGGAGGATTGTTTTGCTGCTAATCAATTCTGGGCTATTTTTGATGATATTGATAGTATGCCAAGATTATATGCTCTCGTCCGGAAAGTCTACTCGCCTTTCAAGTTGAAGATTACTTGGCTTGACATTGACTCAGATGATCAAGGTGAGATTGATTGGCATGATGCTGGTTTGCCTGTTGCCTGTGGCAAGTATAAACTTGGGAAATCTTATAGAACTGCAGATCGTGCTATGTTCTCTCACCAGATCCATTGCATAAAAAGAAGCGACATAGGTTCTTATCTGGTTTATCCCAAGAAGGGCGAGACTTGGGCAATTTTCAGAGATTGGGATATTGGGTGGAGTTCTAATCCAGAAAAGCATCCTGAATATCAATTTGAATATGTGAAAGTCCGATCTGATTTTGATAAGAATATTGGGATTCGAGTTTCTTATCTTGGCAAAGTGAAAGGGTTTGTTAGTATCTTTCAGCAAACTGTGCAGGATGGATTTAGATTATTTTGCATTCCGCCTAATGAGCTGTACAGGTTTTCACATCAAATTCCTTCATATAAGATGGCTGGTAATGAAAGGGAAGGTGTTCCAAGAGGGTCTTTGGAACTTGACCCTGCTGGTATTCCTATTAGTCTTTTTGAAGTTGGTGGTTCTGGTGACGAGAAATTGGAGGATGGAGTGCTAAACAATGGAATCAATGCTTCAATTCATAAATCTTCCATGTCTAAAGCTGAACAGGAAATGTCTAATGAGGGTACTCGCAAAGCAAAGTTGCCTGAGAGTAATGCTTCTGGAAGAGTCTCGCCTATCCTTTTAAGGTCACCAAGGTCAAATGGTCAAGCAAGCACTTGTCAGTATATGTCAAAATGTACAGCCGGAGTTGGTGTCTCTTACAAAGTTGAAAAGAGTAAAGGGGGCCATGAGACTGCAGGATTGACAAAGGCTAGTGTTGGAACTTCCAAACCTGGTACATTCAAAGTCAAGGAATCGCAAAACCCGAAAAATGTTGGAAGTAAGAGAGCAAGGCAGTCAGCATCAGATTCGAGAGATGATCGCACGGCTGAAATTGTTAATGACTTGAAAGATACCAAAGTTCGAGAAAACGGTGCTGATCCTTCTGGGCTTGATGCAGGAATCCATCATAGAAAATCTTCCAGGAAAAAACAGCGTGTTTCATACACAGCTGAAGGTGGTGATAGTCAGAGTTCTTCCAAAAGGTCACGGCAACATGAATCATTTAATATTGCTGAAGTGGGGAGAAAAGAAGTGTCAGCTAATGGTGGGTTGTTCAGTAACAGTAGTCCAGCTAGTTTCACTGCAGGTGTGGCTGGACAGAATGGAGAGATGAGAAACAAAGTAAGTGCCCCACCTGAAGAGTCGCTTTTAGAGAATAAAATGAAAAATAAGAAGTCAAAATTGCAAAGAAAGGCAGCATCCAAGTCAGATCATGATGATAGAACGCCCAAAGCTGATAATTGTTCTCCACCTAATTCAAATTTGCCTCCCAATTTAGAGATCTGCTGCCCTGATCCAGATTTCAGTGATTTTGAGAAGGATAGGGTGGAAGACTGTTTTGCTGCTAGTCAATTCTGGGCTGTTTTTGATGATATTGATGTTATGCCAAGATTCTATGCTCTTATCCGGAAAGTCTACTCCCCTTTCAAGTTGCAGATTACTTGGCTTGATGTTGACTCAGATGACCAGGGTGAGATTGATTGGCATGGTGCAGGTTTACCTGTTGCCTGTGGTAAGTACAAACTTGGTCCATCTCAGATAACTACAAAGCATGCTATGTTCTCTCACCAGATACATTGTATAAAAGGAAGCGACAGGGGTTCCTATCTGGTATATCCCAAGAAGGGAGAAACTTGGGCAATTTTCAGAGATTGGGATATTGGATGGAGTTCAAATCCTGGAAAGCATTCCAAATATCAATTTGAGTATGTGGAAGTCCTATCTGATTTTGATGAGAATATTGGTATTGGAGTTTCTTATCTTGGCAAAGTGAAAGGGTTTGTTAGCCTCTTTCAAAAAACTGTGCAAAATGGATTTAGATCATTTTGCATTCCACCTAATGAGCTATACCGATTTTCACATCAGATTCCTTCGTATAAGATGACTGGTGATGAAAGAGAAGGTGTTCCAAGAGGTTCTTTTGAACTTGACCCCGCCGGTCTGCCTCTTAGTCTTTTTGAAGTTCACAATTCTGGTCTTACCAATCCTTAG 3627 0.4199 MECNKEEALRAKRIAQNRMQSGDFVGGLKFAMKAKQMFPETQNIAQILAVCEVHCAAQNKVSGSDMDWYGILQTEPLAGEVTIRKQYRKLALLLHPDKNKSPGAEAAFKLIEEANRFLSDQIKCSSYDLRITGPLRTTFWTHCSHCKTRYQYYKTVMNAKLRCQQCAKSFRAYDIAYQDASPGYTRSSSDNHKKPPKHVPPKEASKSNGGKPCGRKPRDRFGRFTPVYMSKRTAGVAKVSAPPEESVLENKMKIARSSLQRKEGSKSDVGDREPKSSKCSPLNSNLHSHARNPPQRDELRTFWTYCPHCKTRYQYCKNVMNAKLRCQQCTKSFRAYDMAYQDASPGYTRSSFDNHKEPPKHVPPKDASKCDGGKPCGRRLRDKFGRFSPVSMSKRTSGVAKVSFPPEESVLENRMKIEQSSLKRKEASKSDVDDREPKSSKCSPLNSNLHPNFEIWYPDPEFSDFEKDRAEDCFAANQFWAIFDDIDSMPRLYALVRKVYSPFKLKITWLDIDSDDQGEIDWHDAGLPVACGKYKLGKSYRTADRAMFSHQIHCIKRSDIGSYLVYPKKGETWAIFRDWDIGWSSNPEKHPEYQFEYVKVRSDFDKNIGIRVSYLGKVKGFVSIFQQTVQDGFRLFCIPPNELYRFSHQIPSYKMAGNEREGVPRGSLELDPAGIPISLFEVGGSGDEKLEDGVLNNGINASIHKSSMSKAEQEMSNEGTRKAKLPESNASGRVSPILLRSPRSNGQASTCQYMSKCTAGVGVSYKVEKSKGGHETAGLTKASVGTSKPGTFKVKESQNPKNVGSKRARQSASDSRDDRTAEIVNDLKDTKVRENGADPSGLDAGIHHRKSSRKKQRVSYTAEGGDSQSSSKRSRQHESFNIAEVGRKEVSANGGLFSNSSPASFTAGVAGQNGEMRNKVSAPPEESLLENKMKNKKSKLQRKAASKSDHDDRTPKADNCSPPNSNLPPNLEICCPDPDFSDFEKDRVEDCFAASQFWAVFDDIDVMPRFYALIRKVYSPFKLQITWLDVDSDDQGEIDWHGAGLPVACGKYKLGPSQITTKHAMFSHQIHCIKGSDRGSYLVYPKKGETWAIFRDWDIGWSSNPGKHSKYQFEYVEVLSDFDENIGIGVSYLGKVKGFVSLFQKTVQNGFRSFCIPPNELYRFSHQIPSYKMTGDEREGVPRGSFELDPAGLPLSLFEVHNSGLTNP* 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0248 1208 MobiDBLite consensus disorder prediction 734 749 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 705 749 - -
Lja1g0248 1208 PANTHER - 407 686 - -
Lja1g0248 1208 PANTHER - 283 401 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 249 275 - -
Lja1g0248 1208 PANTHER - 1 132 - -
Lja1g0248 1208 PANTHER - 136 239 - -
Lja1g0248 1208 PANTHER - 748 1204 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 780 809 - -
Lja1g0248 1208 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 748 1204 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 810 836 - -
Lja1g0248 1208 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 942 957 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 416 440 - -
Lja1g0248 1208 Pfam Domain of unknown function (DUF3444) 972 1177 IPR024593 -
Lja1g0248 1208 Pfam Domain of unknown function (DUF3444) 455 659 IPR024593 -
Lja1g0248 1208 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 407 686 - -
Lja1g0248 1208 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 132 - -
Lja1g0248 1208 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 136 239 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 908 968 - -
Lja1g0248 1208 PRINTS DnaJ domain signature 87 102 IPR001623 -
Lja1g0248 1208 PRINTS DnaJ domain signature 103 123 IPR001623 -
Lja1g0248 1208 PRINTS DnaJ domain signature 69 87 IPR001623 -
Lja1g0248 1208 Gene3D DnaJ domain 50 127 IPR036869 -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 182 294 - -
Lja1g0248 1208 CDD DnaJ 67 120 IPR001623 -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 771 878 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 416 446 - -
Lja1g0248 1208 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 283 401 - -
Lja1g0248 1208 SMART dnaj_3 66 123 IPR001623 -
Lja1g0248 1208 SUPERFAMILY Chaperone J-domain 61 132 IPR036869 -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 347 372 - -
Lja1g0248 1208 MobiDBLite consensus disorder prediction 353 372 - -
Lja1g0248 1208 Pfam DnaJ domain 67 128 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0248 Lja-Chr1 2128060 2132641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0248 4 175 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.518 5.82e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0248 - - lja:Lj1g3v4955310.1 2188.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0248 1 2128060 2132641 Lja1g0248 1 2128060 2132641 ECH
Lja1g0248 1 2128060 2132641 Lja5g1512 5 15924837 15927861 PCT