Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0246 ATGGTCGAAATCCTGGGTTATTCCAAAGGGTTGGCATTTATGAGAAAGGGATTGATAACATTTGCATTTGAAATTTTTGAATTTTCAAATTCAAAACAAAAGGGCATGCTGGGGAAGCTATTACATATGGATCTCTTCTTCTTAAAGACACGCTGCTTCTTCCAACAACTTATATCTGGTGTTAGTTATTGTCCTGCAATGCAGGTATGCCATCGTGACTTGAAACATTTGCAGCACTATGACAGAGGGTGTCGCGGTCGCCAAGTTGTGGAAGATGAGATACAAGAGGTTCTTGTGATTAATGCCAGAAGGTTCACAGACTGCAGTTTGGATACGAGAATTCTATTGATGTACTTCAAATTTATATTGGTAGAAACATTGATTTTGGGTAAGATCAAAGACTTGACCAAGGGATTGGAAAGAGAAAATAGAATAATTCAAACAATTATGAGGCAGCTCTTATTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAAAACATTATTTTCTATGAAGGGTCTCGTATATTCAAAATCATTGATCTTGGAGCTGCTACTGATCTCCGAGTTGGCATCAACTACATTCCCAAAGAGTTTCTTTTGGATCCAAGATGGTTTTCTGTCTCCTTCAAGCTATTAGACAAGCAAGCTTGCGGTGCAGAGATAGCTTCAAATCTTGTTGATTTATTTGGTGGGATGAGGTGCTGCCATGGAAGAGGAGGCAATCAGTAG 753 0.3931 MVEILGYSKGLAFMRKGLITFAFEIFEFSNSKQKGMLGKLLHMDLFFLKTRCFFQQLISGVSYCPAMQVCHRDLKHLQHYDRGCRGRQVVEDEIQEVLVINARRFTDCSLDTRILLMYFKFILVETLILGKIKDLTKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFYEGSRIFKIIDLGAATDLRVGINYIPKEFLLDPRWFSVSFKLLDKQACGAEIASNLVDLFGGMRCCHGRGGNQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0246 250 Pfam Protein kinase domain 130 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0246 250 ProSiteProfiles Protein kinase domain profile. 26 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0246 250 SUPERFAMILY Protein kinase-like (PK-like) 48 75 IPR011009 -
Lja1g0246 250 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 124 212 IPR044803 GO:0004674|GO:0009579
Lja1g0246 250 Gene3D Transferase(Phosphotransferase) domain 1 132 237 - -
Lja1g0246 250 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 124 212 - -
Lja1g0246 250 SUPERFAMILY Protein kinase-like (PK-like) 138 209 IPR011009 -
Lja1g0246 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0246 Lja-Chr1 2104772 2113466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0246 116 229 MAP Kinase Kinase Kinase AT5G55090 34.483 1.87e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Lja1g0246 Pkinase 7.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0246 - - fve:101306225 164.851