Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0244 ATGGCTGTGGTGTTGAGTCACGTGCTTTCCAAGCTTCATAGCTTATCAACTTCAGATCATGCTTCAGTAGTTTCCTTGAACCTTTTTGTGGCTCTGCTATGTGCTTGTATTGTCATTGGCCATCTTCTGGAGGAGAATCGTTGGGTGAATGAGTCTATCACTGCCCTTTTGATAGGTGTTTGCATTGGCATAGTCATTTTGTGGGTTAGTCGCGGTAAAAGCTCCCATCTTCTGGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTTCCACCTATCATATTTAATGCAGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATAACCATCATGCTGTTTGGTGCTGTTGGTACATTAATAAGTTGTAGCATCATATCTTTTGGTGTCATACAAACGTTTAAGAGGATAGGAATTGGTTCACTGGAGCTAGGGGACTATCTAGCAATTGGTGCAATATTTGCTGCAACAGATTCTGTGTGCACATTGCAGGTTCTGAGCCAGGATGAGACACCTCTACTGTACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCAAAAGTTTTGACCTTGAGCAAATAGACCACATAGTTGCTGTGCAGTTTTTTGGCAACTTCTTGTATCTGTTTATAGCAAGCACCCTACTTGGCGTTTTGGCTGGTCTACTTAGTGCTTATGTTATTAAGAAGTTGTATATGGGCAGGCACTCAACCGATCGCGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTTTGGCTGAATTATGGTACCTGAGTGGCATTCTCACTGTATTTTTTTGTGGTATAGTTATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACCACCAAACATGCTTTTGCAACCTTGTCATTTGTTTGTGAGATCTTCATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAGAAATGGAGATTTGTTAGTGATAGCCCTGGAACATCTATTCTTGTGAGTTCAGTGTTAATGGCTCTGGTACTTGCTGGGAGAGCAGCATTTGTTTTCCCCTTATCCTTCTTATCCAACCTGACTAAAAAATCCCCAAATAGGAAAATAAGCTTCAGGCAGCAGATAATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTATCAATGGCACTTGCCTATAATCAGTTCACCTTGTCGGGACATACTGAACTACGAGCCAATGCTATCCTGATCACCAGCACCATCAGTGTTGTGCTTTTCAGCACTGTGGTGTTTGGTTTGATGACTAAGCCGCTGATAAGGCTTTTACTTCCTGTTGGCTCCCCTCCTAAGCGGAAAAACAGCATGACAAACTTAGAGACAGAATCTTCATCACCAAAATCAATCACTGTGCCATTTCTTGGAGGTTCCCATGATTCCGAAGCAGATTACGACAGCAGTGAATTTCAAAGTGAAAGCAGTATCCGTGGCTTGCTTACCACACCAACACACACTGTTCATGGCTTATGGCGGAGGTTTGATGATGCATTTATGCGTCCAGTTTTCGGAGGGAGGGGTTTTGTTCCAGTAGAATCTACTACGGCAACTGAACGCAATGGACATCATCAGTGCCATTAA 1644 0.4227 MAVVLSHVLSKLHSLSTSDHASVVSLNLFVALLCACIVIGHLLEENRWVNESITALLIGVCIGIVILWVSRGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFITIMLFGAVGTLISCSIISFGVIQTFKRIGIGSLELGDYLAIGAIFAATDSVCTLQVLSQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLEQIDHIVAVQFFGNFLYLFIASTLLGVLAGLLSAYVIKKLYMGRHSTDREVALMMLMAYLSYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVCEIFIFLYVGMDALDIEKWRFVSDSPGTSILVSSVLMALVLAGRAAFVFPLSFLSNLTKKSPNRKISFRQQIIIWWAGLMRGAVSMALAYNQFTLSGHTELRANAILITSTISVVLFSTVVFGLMTKPLIRLLLPVGSPPKRKNSMTNLETESSSPKSITVPFLGGSHDSEADYDSSEFQSESSIRGLLTTPTHTVHGLWRRFDDAFMRPVFGGRGFVPVESTTATERNGHHQCH* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0244 547 PANTHER SODIUM/HYDROGEN EXCHANGER 7 545 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lja1g0244 547 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja1g0244 547 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja1g0244 547 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja1g0244 547 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja1g0244 547 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja1g0244 547 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 545 - -
Lja1g0244 547 Gene3D - 146 197 - -
Lja1g0244 547 MobiDBLite consensus disorder prediction 454 474 - -
Lja1g0244 547 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 26 445 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja1g0244 547 MobiDBLite consensus disorder prediction 454 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0244 Lja-Chr1 2089918 2094005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0244 10 543 Antiporters AT3G05030 75.746 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0244 - - gmx:100789667 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0244 1 2089918 2094005 Lja1g0244 1 2089918 2094005 ECH
Lja1g0244 1 2089918 2094005 Lja5g1516 5 15951617 15957246 PCT