Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0241 ATGGGATGTGTGATTGGCCGCGAAGCGTCTTCTGGAGTAATCAACGAGGAGAAGAGTTCGCGTGGTGGGGGTAACAGGAAGCTTGATGGAGCAGCCTCGGGGAGCAGAGGAGAGGCGGTGGTAGAGGCTCAGAATGGTGGGAAGGAGGAGAAGGGTGGTGGTGGTGGTGGTGGTGGTGATGGGGTGCAGGAGAGGCAACGTGGAGAGAGGAGGAGATCGAAGGGAAAGGCTAATCCAAGGCTGAGTAATCCGCCCAGGCATTTGCGGGGAGAGCAGGTTGCAGCTGGGTGGCCACCCTGGCTCACTGCTGTTTGTGGGGAAGCTCTCAATGGCTGGATTCCAAGAAAAGCTGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACTTTGACGGGTAAAATTGTTGCTCTGAAGAAGGTTCGATTTGACAATTTGGAGCCTGAGAGCGTAAAATTCATGGCTAGAGAGATTATTATTCTGCGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGCTTAGTTACATCGAGGATGTCCTGTAGTTTGTATTTGGTGTTTGATTACATGGTACATGATTTAGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACAGAACCTCAGGTCAAATGCTACATGCGTCAGCTGCTATCAGGACTTGAGCACTGTCATCACCGTCGTGTACTTCACCGAGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAGTACTTAAGATTGCTGACTTTGGACTGGCATCTGTTTTTGATCCAAACCATAAGCATCCTATGACTAGTCGTGTAGTAACCCTGTGGTATCGGCCTCCTGAGTTGCTCCTTGGTGCCACCGATTATGATGTGGGCGTAGACCTTTGGAGTGCTGGATGTATTTTAGGAGAGTTACTTGCTGGGAAGCCAATTATGCCTGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGCGGTTCACCTTCTGATGAATATTGGAAGAAGTCAAAGTTGCCGAATGCTACCTTGTTTAAACCTCGAGAGCCGTACAAGAGATGCATAAGGGAGATATTTAAAGATTTTCCACCATCTGCACTACCCCTTATTGACACTCTTCTTGCAATTGACCCTGTAGAACGGAGAACTGCATCGGATGCTTTAAGAAGTGAGTTCTTCACAACGGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGTAAAGAAATGGATGCTAAACGACGAGATGATGAAATGAGGAGACAAAGAGCTGCAGGCAAAGCTCAGGCTGATGGTTCAAAGAAGCATCATCGTACACGCGATCGTGCTGTCAAAGCTTTTGCTGCTCCTGAAGCCAATGCTGAACTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGCGAAAAATTCCCTCCACCACATCAAGATGGACAACTTGGCTTTCCTTTGGGAGCTTCACATCATATTGATCCAGATACTGTTCCTACCGACGTCTCTTTCACATCAGTCTCTTATAACTTCCCAAAGGAGCCATTCCAAGCTTGGTCAGGTCCTATTGGCAATGCTGCGGACATTGGAGTGCCGAAGCGGAAGAAGAAACACACTACAGGTGATGCATTGGATTTATCAAAACCACAGAAAGGTGCCCTCAAAGATAAGGTTAAAGGAAAGAAAATCATAGCTTAG 1755 0.4621 MGCVIGREASSGVINEEKSSRGGGNRKLDGAASGSRGEAVVEAQNGGKEEKGGGGGGGGDGVQERQRGERRRSKGKANPRLSNPPRHLRGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREIIILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMVHDLAGLAASPGIRFTEPQVKCYMRQLLSGLEHCHHRRVLHRDIKGSNLLIDNEGVLKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYDVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIREIFKDFPPSALPLIDTLLAIDPVERRTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRQRAAGKAQADGSKKHHRTRDRAVKAFAAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGASHHIDPDTVPTDVSFTSVSYNFPKEPFQAWSGPIGNAADIGVPKRKKKHTTGDALDLSKPQKGALKDKVKGKKIIA* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0241 584 CDD STKc_CDK9_like 120 404 - -
Lja1g0241 584 Gene3D Transferase(Phosphotransferase) domain 1 203 444 - -
Lja1g0241 584 PANTHER CELL DIVISION PROTEIN KINASE 70 558 - -
Lja1g0241 584 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0241 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lja1g0241 584 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0241 584 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0241 584 MobiDBLite consensus disorder prediction 422 452 - -
Lja1g0241 584 MobiDBLite consensus disorder prediction 1 93 - -
Lja1g0241 584 PANTHER OS01G0367700 PROTEIN 70 558 - -
Lja1g0241 584 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Lja1g0241 584 MobiDBLite consensus disorder prediction 549 584 - -
Lja1g0241 584 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lja1g0241 584 MobiDBLite consensus disorder prediction 411 456 - -
Lja1g0241 584 MobiDBLite consensus disorder prediction 539 584 - -
Lja1g0241 584 SUPERFAMILY Protein kinase-like (PK-like) 114 411 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0241 Lja-Chr1 2061151 2065725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0241 112 444 Core Cell Cycle Gene Families AT5G10270 52.436 2.13e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja1g0241 Pkinase 7.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0241 K08819 - gmx:100786837 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0241 1 2061151 2065725 Lja5g1518 5 15966752 15972151 ECH
Lja1g0241 1 2061151 2065725 Lja1g0241 1 2061151 2065725 ECH
Lja1g0241 1 2061151 2065725 Lja5g1518 5 15966752 15972151 PCT