Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0230 ATGGCCCCTCATTCATTAGAAGAGTCAAGTACAAAACTTGCCAGCAATGAAGACAATCATCTTAAACAACCACAACAAGGAGAAGAAGAAGAAGAGGAAGATGGATTCCTGTTTGGCATGCAAATAATGGGTTCATTTGTGGTTCCATTGGCTCTGCGATCAGCGATTGACCTTGGAGTTTTTGACATTCTAGCCAAAGCTGGTGAAGGTGCTAAGCTCTCTGCAAACGATATTGCACTTGAGATTGGTACCAACAACCCTGAAGCACCTGCAATGCTGGATCGTCTTCTCAGGATGCTGGCTAGTCACTCTCTGTTATCTTGCTCTGTTTCTGTCTCTGATCAACATTCACAGAGATTCTACAGCCTCTCCCATGGCTCCAAATATTTTGTCACCAATGCTGATGGTGTTTCCTTGGGAGCTACCTTGGCCTTGCTTATAGACAACGTCTTCTACCAAAGCTGGACTGAACTGAAAGGTGCAATCCTGGAAGGAGGTGTACCATTCAACAGGGTTCATGGCATGCATGCTTTTGAATACCCAAATGTGGATCCAAGGTTCAATGATGTTTTCAACAAAGCTATGGTCAACTCAACCACTTTAACTATGAAAAGGATTCTTGAATTATACAATGGATTTGAGCACATCACTAAGCTGGTGGATGTTGGTGGTGGTCTTGGAATCAATCTTAAATTGGTCACCTCCAAATACCCTCATGTCCAAGGTGTTAATTTTGACTTGCCTCATGTCATACAACATGCACCTGTGTATGCAGGGGTGGAGCATGTGGGAGGAGATATGTTTGAAAGCGTTCCCACTGGGGATGCAATTTTCATGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCCTGAAGCTGTTGAAGAATTGCTACAAAGCTATTCCTGATGATGGAAAGGTTATTGTTGTGGACTCAGTTGTGCCTGCTGTGCCCGAGACAACAACTGCAGCAAAGAATGTTTTCAATTCTGACCTCATAATGATGACACAAAACCCAGGAGGAAAAGAACGAACCGAGCATGAATTCATGGAATTGGCTAAAGGATCTGGATTTAGGGGCATCAGATTCGTTTGCTCTGTCTCTGGCCTCTGGGTTATGGAGTTCTTTAAGTAA 1137 0.4354 MAPHSLEESSTKLASNEDNHLKQPQQGEEEEEEDGFLFGMQIMGSFVVPLALRSAIDLGVFDILAKAGEGAKLSANDIALEIGTNNPEAPAMLDRLLRMLASHSLLSCSVSVSDQHSQRFYSLSHGSKYFVTNADGVSLGATLALLIDNVFYQSWTELKGAILEGGVPFNRVHGMHAFEYPNVDPRFNDVFNKAMVNSTTLTMKRILELYNGFEHITKLVDVGGGLGINLKLVTSKYPHVQGVNFDLPHVIQHAPVYAGVEHVGGDMFESVPTGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDDGKVIVVDSVVPAVPETTTAAKNVFNSDLIMMTQNPGGKERTEHEFMELAKGSGFRGIRFVCSVSGLWVMEFFK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0230 378 Pfam O-methyltransferase domain 155 360 IPR001077 GO:0008171
Lja1g0230 378 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g0230 378 Gene3D - 17 130 IPR036388 -
Lja1g0230 378 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 40 378 IPR016461 GO:0008168
Lja1g0230 378 Pfam Dimerisation domain 51 101 IPR012967 GO:0046983
Lja1g0230 378 PIRSF O-mtase 16 378 IPR016461 GO:0008168
Lja1g0230 378 PANTHER O-METHYLTRANSFERASE 15 378 IPR016461 GO:0008168
Lja1g0230 378 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 376 IPR029063 -
Lja1g0230 378 Gene3D Vaccinia Virus protein VP39 131 378 IPR029063 -
Lja1g0230 378 SUPERFAMILY "Winged helix" DNA-binding domain 30 133 IPR036390 -
Lja1g0230 378 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 15 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0230 Lja-Chr1 1960411 1962785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0230 32 378 Monolignol Biosynthesis Gene Families AT5G54160 53.736 5.01e-143 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0230 K13066 - gmx:100789402 530.02