Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0226 ATGGCGTCTGAGCAACACGACACCGTTTTCCCCCAACAAGACATGGACGACGACGACGAGGATTCTCACGAGGACGAGGAATACGACGACGATGTTCTGCCTGACGACGATGAAAGCGAACCTTCTCCCCCCGCCTCCTCCGCCCTCGCCGTCACCGTCGCCGTCCCCAGCTCCTCCATCTCCAACGGAGCCACCACCACCGTCCCAATTCAATCCTCCGCCGCGACCACAATCGTCACCCCCTACTCCGATCCGAAACGCCACCGCACGGAGCCAATCGAAGAGAAAAAACCCCCTCCTCCTCCGGACGACTCGCGGCGGCTGTTTCAGCGGTTATGGACCGACGAGGACGAGATGGAGCTCCTTCAGGGCTTCCTCGACTACACCACGCAGCGAGGATCCTCTAACCAAACCGACACCGCTCTGTTCTACGATCAAATCAAGTCGAAGCTCCAGCTCGATTTCAACAAGAGCCAGCTCGTCGAGAAGATCCGAAGGTTGAAGAAGAAGTACCGGAACGTTGTCAACAGAATCAGCTCCGGCAAGGATTTTTCCTTCAAGACCGCTCACGATCAAGCCACCTTCGAAGTCTCACGCAAGATCTGGGGCAACGTAACCCCAATCGCCGCCACCGATGACATGATCGCCGTTGACGATGACGAAATCAACCTCAACCCAGCCCCTAACCCTAATCCTAATCACAATTTCAGCTCCCCGGTGCTCAAGTACGAGGTGATTTTCGGGAATTCGACGGAGAAGAAGACGCGGAAGCGGTCACGGCCTTCACCGGCGATCAAGAGCGTTGAGAAGCGTGAATTGAACTTGAACGATGGAGCAGCGTGTAGCAAGGACCGTAACGTTACCACTGCAGCTACCACTAACGCTGCTAGTGATAATTGTGACAGTGGGAATGGGAACGTAGCGGGTTTGATTGAAGAGACGGTGAAGAGTTGTTTGTCGCCGTTGTTGAAGGAGCTGGTGGCCGGAGCAATGAGGGGGCCGTTTGGGGCGAGAGGGTTGAGTCCGGTGGGGTTGATGAATTTGGGGTTTGGGGAATTGGTGGATGAGAAATGGAGGAAGCAACAGATATTGGAATTGGAAGTGTACTCAAAGAGGTTGGAGCTGGTTCAGGATCAGGTCAAGGCTACTATGGAGGAGCTGCGGTCAAGTGGTGGTGGTGGTGGAGGAGGGGTATGA 1197 0.553 MASEQHDTVFPQQDMDDDDEDSHEDEEYDDDVLPDDDESEPSPPASSALAVTVAVPSSSISNGATTTVPIQSSAATTIVTPYSDPKRHRTEPIEEKKPPPPPDDSRRLFQRLWTDEDEMELLQGFLDYTTQRGSSNQTDTALFYDQIKSKLQLDFNKSQLVEKIRRLKKKYRNVVNRISSGKDFSFKTAHDQATFEVSRKIWGNVTPIAATDDMIAVDDDEINLNPAPNPNPNHNFSSPVLKYEVIFGNSTEKKTRKRSRPSPAIKSVEKRELNLNDGAACSKDRNVTTAATTNAASDNCDSGNGNVAGLIEETVKSCLSPLLKELVAGAMRGPFGARGLSPVGLMNLGFGELVDEKWRKQQILELEVYSKRLELVQDQVKATMEELRSSGGGGGGGV* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0226 398 MobiDBLite consensus disorder prediction 51 80 - -
Lja1g0226 398 PANTHER BNAANNG10740D PROTEIN-RELATED 1 391 IPR007592 GO:0006355
Lja1g0226 398 PANTHER BNAANNG10740D PROTEIN 1 391 - -
Lja1g0226 398 MobiDBLite consensus disorder prediction 84 106 - -
Lja1g0226 398 MobiDBLite consensus disorder prediction 1 106 - -
Lja1g0226 398 MobiDBLite consensus disorder prediction 13 38 - -
Lja1g0226 398 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
Lja1g0226 398 Coils Coil 157 177 - -
Lja1g0226 398 Coils Coil 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0226 Lja-Chr1 1934783 1936413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0226 1 394 GeBP Transcription Factor Family AT5G28040 43.182 3.45e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Lja1g0226 DUF573 3.3e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0226 - - gmx:100779712 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0226 1 1934783 1936413 Lja5g1540 5 16245682 16246851 PCT