Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0222 ATGCAAAGAGAGAGAGAAAGAGATAAACTCTGTTCTCAACAAGGAAGAACACAGCTCAATCTCAATCTGATAGCTGAATTGAAGAAGATGAATGGCATGACACAGCTTGAACCAGATGATTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCTAAGACAGTATACAAAGCATTTGATGAATACCAAGGGATTGAGGTTGCTTGGAATCAGGTCAAACTGTATGATTTCCTTCAAAGCCCTGAAGATCTCGAGAGGCTGTACTGTGAAATTCATCTTCTCAAGACGTTGAAGCACAGAAACATAATGAAATTTTACACTTCTTGGGTCGACACAGCAAATAGGAATATCAACTTTGTCACAGAAATGTTCACTTCTGGTACTCTTAGGCAGTATAGGTTAAAGCACAAGAAAGTTGACATCAAAGCAGTGAAGCATTGGTGCAGACAGATCCTGAGAGGACTACTCTATCTTCATAGCCATGATCCCCCAGTGATTCATAGAGATCTCAAATGTGATAATATTTTTATCAATGGAAACCAAGGGGAAGTGAAGATTGGAGATCTTGGCTTGGCAGCGATTCTTCGGAAATCCCATGCTGCTCGTTGTGTAGGAACACCTGAATTCATGGCACCAGAAGTGTATGAAGAGGCATATAATGAATTAGTTGACATATATTCGTTTGGTATGTGTGTATTAGAAATGGTCACATTTGAGTATCCTTATAGCGAATGCAACCATCCAGCACAAATCTACAAGAAAGTTATTTCTGGGAAAAAACCAGATGCTCTGTATAAAGTAAAGGATCCAGAAGTGCGACAATTTGTTGACAAATGCTTGGCAACTGCGTCTCATAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAACTTGATGATTATGAATATGATTGGGGACCGGTAGACAGTGGATCTTTTAACGAATTTGGTCCTCTCATCGGTCAACCATTCTTTGATCGGAGCTATAGTAACTTAAGTACTGAATACTCAAATGGGTTTTGGTATGAAGGAGACTCGTATTCTCATCCTGCTGAGATTGAACCTAGTGGAATTGAACTTTTTGAATGCCATGATGATGAGCCCGCCAAAGATGTCGACATAAGCATCAAAGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGCCGTATTAGGAACATTCATTTCCCGTTTGACATTGAGATGGACACAGCATTAAGTGTAGCAACGGAAATGGTTGCGGAACTAGACATTACTGATCAGGATGTTTCCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCTTTGGTACCTGAATGGAGGCCAGGGCCAGGAATTGAGGAAACTACCCATTTTGCAAATCAAAATTTCTGTATCAATTGCGTGTCTAATCATGCTTCTGGGGGCACTGATATGGACTTAATGTCACATAGCCAGGGTGGAAATGGAAAGAACTTGCAGCTTCTTCAATGCTGCAGGCATGGATGCGCTTCAATGCACGGGCGGTTTGAGGAGATTACCTTCCAATCTGAGGAGTATGACAACCATGTTACAGAGGATGCTCCTAACATATCAAGCCAATCAGACTGCTTGCAGTATCAGGAGTCATGGAATCATCATGAAAGCCGGGAACTTAGTCCGGTCGAGTCTGTTCGAAGCCATTCTGATGATCAATATGAACACTTAGATAAATCAGCATTAGCAGAAGATAAAGGACATGATGTTTGGGAAAACAATGTTGAGAATGAGTATGAGAAAGAGATCCAACAAGAGCTGAGATGGCTCAGAGCAAAATACCAAATGGAATTAATGGAACTGAAGGATAAACAGCTTGGTCTTGCAGCTACAGCTGACAGAAAGCAGCATAAAACAGAACAAGACTTTATGGCACTTCCGCTGACAGAAACAGCAAAAGAGGATCATGGGATTCATTTGAAACCCTTTGGGAATAACTGGAACTGTGATTCTAGTTGTGAGTCTCAAGTCCAAAAGAGCCACCCCAATTTGGACACCCAAAGGGCCCAAAATTGTGAGGTGATGTGTTCTCATGGAGAAGGTATGGTCACTGCTAAGAGTTTTTACACCGGCACTCTACACAGGACAGTTTCCCTTCCAGTTGATGCTGTGGATGTGTAA 2205 0.4159 MQRERERDKLCSQQGRTQLNLNLIAELKKMNGMTQLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKKVDIKAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAARCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVKDPEVRQFVDKCLATASHRLSARELLDDPFLQLDDYEYDWGPVDSGSFNEFGPLIGQPFFDRSYSNLSTEYSNGFWYEGDSYSHPAEIEPSGIELFECHDDEPAKDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIHFPFDIEMDTALSVATEMVAELDITDQDVSRIADMIDGEIASLVPEWRPGPGIEETTHFANQNFCINCVSNHASGGTDMDLMSHSQGGNGKNLQLLQCCRHGCASMHGRFEEITFQSEEYDNHVTEDAPNISSQSDCLQYQESWNHHESRELSPVESVRSHSDDQYEHLDKSALAEDKGHDVWENNVENEYEKEIQQELRWLRAKYQMELMELKDKQLGLAATADRKQHKTEQDFMALPLTETAKEDHGIHLKPFGNNWNCDSSCESQVQKSHPNLDTQRAQNCEVMCSHGEGMVTAKSFYTGTLHRTVSLPVDAVDV* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0222 734 SMART serkin_6 53 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0222 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Lja1g0222 734 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 401 455 IPR024678 GO:0004674|GO:0005524
Lja1g0222 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 30 604 - -
Lja1g0222 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 602 724 - -
Lja1g0222 734 SUPERFAMILY Protein kinase-like (PK-like) 56 311 IPR011009 -
Lja1g0222 734 Gene3D Transferase(Phosphotransferase) domain 1 136 315 - -
Lja1g0222 734 CDD STKc_WNK 51 310 - -
Lja1g0222 734 ProSiteProfiles Protein kinase domain profile. 53 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0222 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 602 724 - -
Lja1g0222 734 Pfam Protein kinase domain 56 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0222 734 Gene3D - 398 465 - -
Lja1g0222 734 Gene3D Phosphorylase Kinase; domain 1 37 134 - -
Lja1g0222 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 30 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0222 Lja-Chr1 1897524 1900883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0222 30 634 MAP Kinase Kinase Kinase AT3G22420 50.855 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja1g0222 Pkinase 5.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0222 K08867 - gmx:100775959 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0222 1 1897524 1900883 Lja1g0222 1 1897524 1900883 ECH
Lja1g0222 1 1897524 1900883 Lja5g1542 5 16253051 16256864 PCT