Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0213 ATGTTCGATGGAGTGCCAGAACATTTGCACCAATTCGTAGCTGCTAGGACCACTCTTCCGCTTCACTCACCATTCCCACTCCTCCATGTCTCTGCAGCACAGAATAGCTTCCTGCCTTTTGATCCTTACAACCCTTCTTCTCATCAGCAACAATTGCAACTCCAAACCAATCTCTTGCACCACCAGTCCCCTGCTCACAAAATTGAAGATAATGAAGCAAGTAGCACTCTTTCTCCAATCAACTTTGAAATTGAAAGAGATCAAAGAATATTACCAGAGATGACAGATTCCTGGACAAACGATGAAGTGCTTGCACTCTTGAGTATCAGATCTAGCATGGAGAATTGCTTCCCAGAGCTCACTTGGGAACATGTCTCAAGAAAGTTAGCAGAGATTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTTGATGATGAAAGCAGATATTTCAACAACATTAATTACGGAAAAAGCTACGATTTTATTAGTGAGCTTGAAGTGCTTTATCAAGGTGGTGATGATCAAAACTCTGATGAAAAGACTAAGCAACTTGAAAAGCCAATGGAACATTTGGAAGAGAATTCTAGAATATTGGATAATAATATTGATGATGCTCCAGTGACCAAACAATGTGAAGGAAATGACAAAATTGTTGAAAAGTCAAGGGAGAAAAAGAGGAAGAGGCGTGAGAGGTTTGAAATGGTGAAGGGCTTTTGTGAGAGTGTAGTGAACCAAATGATGGCTCAACAAGAGGAAATACACAAGAAGATCCTCAGAGACATGCTGAAGAGAGAAGAAGAGAAGCTCTCAAGAGAAGAAGCATGGAAGAAGCAAGAGGTGGATAGGATGAACAAGGAGCATGAGATGATGGCACAAGAGCTAGCTCTTGCAAGAGATAAGCATGCCACCATAGCTGAATTCTTGAAGAAATATGTATCAAGTTTCCCTTCAAGCCAAAACAAATATCTCAACTCCAAAACAAAAGGTTCACATAGAAATTCCCAAAACCCTAATCCTTCTACTTTTTTAGTTTGTGAATCAGATGTCTTCACTCATTCGGGAAACTGTAGCGGGGGAGAGAACAATCTTGAGCCAACACCTTCTTCGCATATGATTATTCTAGATAATCATCCTCAAACTATTACTCCTACTTCTCCTAGCCAAAACAATTCAAATTTACAAAACCCTAGTTCAAGTACCGCATTGTTACAAGATCCTTCTTCATCCAATTCATCTTCAGCACCCCACAACCCTAGTTGTAATTCTTCACTCAACAGCCATGAAAATCCACTAGAGTACTCATATTCAGAGGCTACAAATAAAGCAACCCCAATCACACTTGTTCCCTACATGGAGAAAGGGGATGTTGGGAAAAGATGGCCAAGAGATGAAGTGTTAGCATTGATAAACCTCAGGTGCATGAGTCTGAATAATAACAATAATAGCAATAATGAAGAGAAGGTTCAAGGAAACAAAGGTCCTTTGTGGGAGAGAATCTCACAAGGGATGTCAGAGCTGGGGTACAAGAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAATAAGTATTTTAGAAAAACCAAAGATGTTAAAAAGAAAAGGTCACTGGATTCTAGGACTTGCCCCTACTTCCACCAACTGAGCTGTTTGTACAACAATCAAGGAAAGCTTGCTCCACAATCTGAAGAGCCAGGATCTCTTGACTTGAATCCAACCTTGAATTCTGGGAATATGTCACTGGATCAACCCCAAGCTGAGACTAATTCTTTGGTTTAA 1788 0.4044 MFDGVPEHLHQFVAARTTLPLHSPFPLLHVSAAQNSFLPFDPYNPSSHQQQLQLQTNLLHHQSPAHKIEDNEASSTLSPINFEIERDQRILPEMTDSWTNDEVLALLSIRSSMENCFPELTWEHVSRKLAEIGFKKSAEKCKEKFDDESRYFNNINYGKSYDFISELEVLYQGGDDQNSDEKTKQLEKPMEHLEENSRILDNNIDDAPVTKQCEGNDKIVEKSREKKRKRRERFEMVKGFCESVVNQMMAQQEEIHKKILRDMLKREEEKLSREEAWKKQEVDRMNKEHEMMAQELALARDKHATIAEFLKKYVSSFPSSQNKYLNSKTKGSHRNSQNPNPSTFLVCESDVFTHSGNCSGGENNLEPTPSSHMIILDNHPQTITPTSPSQNNSNLQNPSSSTALLQDPSSSNSSSAPHNPSCNSSLNSHENPLEYSYSEATNKATPITLVPYMEKGDVGKRWPRDEVLALINLRCMSLNNNNNSNNEEKVQGNKGPLWERISQGMSELGYKRNAKRCKEKWENINKYFRKTKDVKKKRSLDSRTCPYFHQLSCLYNNQGKLAPQSEEPGSLDLNPTLNSGNMSLDQPQAETNSLV* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0213 595 Coils Coil 250 270 - -
Lja1g0213 595 MobiDBLite consensus disorder prediction 563 595 - -
Lja1g0213 595 MobiDBLite consensus disorder prediction 379 430 - -
Lja1g0213 595 Pfam Myb/SANT-like DNA-binding domain 96 157 IPR044822 -
Lja1g0213 595 Pfam Myb/SANT-like DNA-binding domain 460 551 IPR044822 -
Lja1g0213 595 MobiDBLite consensus disorder prediction 319 344 - -
Lja1g0213 595 Gene3D - 98 154 - -
Lja1g0213 595 Gene3D - 462 530 - -
Lja1g0213 595 PANTHER - 13 581 - -
Lja1g0213 595 CDD GT1 460 532 - -
Lja1g0213 595 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 581 - -
Lja1g0213 595 Coils Coil 282 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0213 Lja-Chr1 1844142 1846550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0213 234 556 Trihelix Transcription Factor Family AT5G28300 37.309 4.92e-46 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g0213 Myb_DNA-bind_4 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0213 - - gmx:100801868 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0213 1 1844142 1846550 Lja1g0213 1 1844142 1846550 ECH
Lja1g0213 1 1844142 1846550 Lja5g1549 5 16352610 16355401 PCT