Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0212 ATGGAATTTTGCTTTAGTATTCATTCTTTTATTTATTCATTTCTGGTCTTGTTGAAAGGACTTAACATGCTTCATTTAGTAAGTACTTTTTATCCAGGAAAGGGAAACCTATTACATATTGACGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCCTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAATATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCACGTAGGTCTGCACACCAGGAGATGGAGCTCATCTCCAAAATGAGAAATCCATTTATTGTAGAGTATAAAGATTCGTGGGTAGAAAAGGGTTGCTATGTGTACATTATCATTGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTATGTTTTCTGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCCCTTGATTACTTGCACATGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGACATACGTCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTCGCCTCCTCTGTTGTGGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGCATTTATGAAATGGCCTCGCATAAGTCCGCTTTCAAAGCATTTGATATACAAGCCCTGATTATGAAGATTAATAAGTCGATAGTGGCTCCATTGCCAACAAAGTATTCTAGTGCATTTCGAGGTTTGGTTAAAACCATGCTAAGGAAAAATCCAGAGCTTAGACCCAGCGCTGCAGAGTTACTTGGGCACCCACATCTTCAACCATATGTTCTTAAGATCCATCTCAAAATCAATAGCCCCAGGCAAAGTAGGCTGCCGTGTCATAGGCCAGAACCCAACTACATGAAGAAAACTAGGTTTTTGAAGCCAGAGGGTGATCCAGTGTCATACTCTGAAGATAAGGAACATTCTTTCAACAATGATCGGACTTTAAATCCTAGTGTATCTGGAGCAGAGCAAGATTCTCTATGCTCTACCCGAGAAATAAATTGCACTTCAGATCATTTGAATCAAGGGTTAGCTGAAATGTGTGTTGGAGATAGCCATGACGTGAAGTCATTCTACAAGCCAGCCGTTTCCCGAACTCATAGTGTTACCAAGACTGCAAGACTTACTTCATCGAAAGCATCTGCCACCCCGAAGAAATCAATGGAACCCTCGAAGACTCATAAGCTTCCTGTTTCGCACAATAGGAAACAACCTGTCCATGCAACTCGCAGAGTATCATTGCCATTGCCAAGAAGTTGTGTCATTCAGCAGCCTCCCCGCAGGCCCAGTATTGATTTACTTGGCCATGTGAATTCGCCCAATATTTCGGTTAACTCTCCCCGTATTGATAAGATGGCAGAGTTCCCATTAGCATCATATGAAGATCAATCGTTTCCCATCAATAGATCTTCACCAACCTCTGTGCAGGGTTCCTCAGGATACCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAGTCGAGGTATGTGACAGAGCCTACGTTAGGCCTAGTTGTAGGGATGCTTGGCAGGGAATCAAGGTCAAACACAGCATGTTCACTGTAAATGATGAGGGAAAAAGTCGCTCTTCTGATCAAAATGGAACTGGTAGAGCATCAAGCCACAACTCTTCAGACTTGCGCCGCCGACAGTTTGATACTTCATCGTTCCAACAAAGGGCTGAAGCCTTAGAAGGGCTGCTTGAATTTAGTGCAAGATTACTACATCAGCAAAGGTATGACGAACTTGGGGTTTTGTTAAAACCGTTTGGGCCCGGAAAAGCTTCCCCAAGGGAAACTGCAATTTGGTTAAGCAAGAGCCTCAAAGAGAACGCTTTCAACCGTGAAGAATCCGCCTAA 1995 0.4256 MEFCFSIHSFIYSFLVLLKGLNMLHLVSTFYPGKGNLLHIDDMEQYEILEQIGKGAFGSALLVKHKHEKKIYVLKKIRLARQTERSRRSAHQEMELISKMRNPFIVEYKDSWVEKGCYVYIIIGYCEGGDMAEAIKKANGVMFSEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMASHKSAFKAFDIQALIMKINKSIVAPLPTKYSSAFRGLVKTMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINSPRQSRLPCHRPEPNYMKKTRFLKPEGDPVSYSEDKEHSFNNDRTLNPSVSGAEQDSLCSTREINCTSDHLNQGLAEMCVGDSHDVKSFYKPAVSRTHSVTKTARLTSSKASATPKKSMEPSKTHKLPVSHNRKQPVHATRRVSLPLPRSCVIQQPPRRPSIDLLGHVNSPNISVNSPRIDKMAEFPLASYEDQSFPINRSSPTSVQGSSGYPPCGNDSTLIDKCTVEVCDRAYVRPSCRDAWQGIKVKHSMFTVNDEGKSRSSDQNGTGRASSHNSSDLRRRQFDTSSFQQRAEALEGLLEFSARLLHQQRYDELGVLLKPFGPGKASPRETAIWLSKSLKENAFNREESA* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0212 664 ProSiteProfiles Protein kinase domain profile. 46 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0212 664 CDD STKc_Nek 45 300 - -
Lja1g0212 664 MobiDBLite consensus disorder prediction 415 430 - -
Lja1g0212 664 MobiDBLite consensus disorder prediction 336 365 - -
Lja1g0212 664 Pfam Protein kinase domain 46 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0212 664 MobiDBLite consensus disorder prediction 569 587 - -
Lja1g0212 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lja1g0212 664 MobiDBLite consensus disorder prediction 415 449 - -
Lja1g0212 664 MobiDBLite consensus disorder prediction 336 354 - -
Lja1g0212 664 MobiDBLite consensus disorder prediction 569 598 - -
Lja1g0212 664 Gene3D Phosphorylase Kinase; domain 1 27 125 - -
Lja1g0212 664 PANTHER SERINE/THREONINE-KINASE NEK4 43 649 - -
Lja1g0212 664 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Lja1g0212 664 SMART serkin_6 46 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0212 664 Gene3D Transferase(Phosphotransferase) domain 1 126 313 - -
Lja1g0212 664 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 43 649 - -
Lja1g0212 664 SUPERFAMILY Protein kinase-like (PK-like) 43 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0212 Lja-Chr1 1833512 1840562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0212 52 301 MAP Kinase Kinase Kinase AT1G53570 32.812 1.77e-37 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja1g0212 Pkinase 1.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0212 K08857 - gmx:100796019 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0212 1 1833512 1840562 Lja1g0212 1 1833512 1840562 ECH
Lja1g0212 1 1833512 1840562 Lja5g1550 5 16367944 16376182 PCT