Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0211 ATGGGGAAGGCTGGCAAATGGATCAAAAACCTTCTTCTAGGGAAAAGAGAAGAGAAGTTTAAGAAGATTGATATATTCTACCCGGAGAACAACACTGAAACATCTTTTGATACCAAAGTGAAGCGCAGATGGAGCTTTCGAAAACCAGTAGGTGGAAGTGCAAGAATAACAAGCAAGGTAGCAGTGAATAAATTTTCCACATCTTTTGACTCGGGTGACTTGGCTAAACTGCAAATACAGGCCTTGTTGGAAACTCACTCTCCAAGGTGTCTTCAAACAGCACTGACAAAGGCTTGTGAAGACATTGAAGTTAGAATAGCAGCTGCTACAAAAATTCAGGCTGCCTTTCGCTCATATTTGGCAAGGAGAGCATTGCATGCATTAAGGGGATTAGTCAAGATACAAGCACTAGTTAGGGGTCACCTTGTGAGGAAACAAGCAACTGCTACTATGCGTGGCATGCATGCGTTGATGGCCATTCAAGTTAGAGCCAGAATTCACAGAATTCAAGTGGCAGAGGAAGCAAATCTGCTCGGAAAGCAGCCTCCGCAACATAGAGAGTTTCCTCACTTCAAAGGTCGCGTAACAGAAGAAAATAAAGATTCAAAGGATATGCATCTGAAATATAGGTTCGAACCTTTGAAAAGTAGAAGTGGCCCTCTAGATTGTTCACAAGTTAAGAGCAGAAAGTATGATTCCATGACATTCTATTCAAAGCATCTGTCAGTTTTGAAACGAGAAAATCAATACAAGCAGAAAACTTTACTCACAGCACCAAACAGTCCAGTCAATAACCGGCGCATGTCTGATTTTAACCCAACAACAATGGATTTATCAACTCCCCCTCACCACATAGTGCCTCACCGCCAGTCATGGTCACCAAGTTTCATGAACAACACAGAATCTTCAAAGGCAAAATCAAGGTCTCAGAGCGAACCGAGACAACGACCCAAACAGGGAACGAAGCACCAAATCAAGTTTGCAGAATCTCCCTTGAATGGTCCAAGGCAAAACCTGTTCTCAAAATCATTGCGCTATGATCATGGAAATCTGGACCACTGGGTCATTAATCTCCATGGGTCGATGAAGGACAGCAAGCGTGATTCCTTTGGCAGCAGCACTGTCACTAGTGATTCCTATTACTGA 1146 0.4302 MGKAGKWIKNLLLGKREEKFKKIDIFYPENNTETSFDTKVKRRWSFRKPVGGSARITSKVAVNKFSTSFDSGDLAKLQIQALLETHSPRCLQTALTKACEDIEVRIAAATKIQAAFRSYLARRALHALRGLVKIQALVRGHLVRKQATATMRGMHALMAIQVRARIHRIQVAEEANLLGKQPPQHREFPHFKGRVTEENKDSKDMHLKYRFEPLKSRSGPLDCSQVKSRKYDSMTFYSKHLSVLKRENQYKQKTLLTAPNSPVNNRRMSDFNPTTMDLSTPPHHIVPHRQSWSPSFMNNTESSKAKSRSQSEPRQRPKQGTKHQIKFAESPLNGPRQNLFSKSLRYDHGNLDHWVINLHGSMKDSKRDSFGSSTVTSDSYY* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0211 381 MobiDBLite consensus disorder prediction 362 381 - -
Lja1g0211 381 MobiDBLite consensus disorder prediction 291 306 - -
Lja1g0211 381 Pfam Protein of unknown function (DUF4005) 264 325 IPR025064 -
Lja1g0211 381 MobiDBLite consensus disorder prediction 367 381 - -
Lja1g0211 381 Gene3D - 105 175 - -
Lja1g0211 381 PANTHER IQ-DOMAIN 5-RELATED 1 368 - -
Lja1g0211 381 MobiDBLite consensus disorder prediction 254 337 - -
Lja1g0211 381 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Lja1g0211 381 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Lja1g0211 381 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Lja1g0211 381 SMART iq_5 104 126 IPR000048 GO:0005515
Lja1g0211 381 SMART iq_5 127 148 IPR000048 GO:0005515
Lja1g0211 381 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Lja1g0211 381 MobiDBLite consensus disorder prediction 254 279 - -
Lja1g0211 381 MobiDBLite consensus disorder prediction 307 323 - -
Lja1g0211 381 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 368 - -
Lja1g0211 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 147 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0211 Lja-Chr1 1831260 1833320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0211 1 345 IQD Protein Family AT4G14750 32.329 1.25e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0211 - - gmx:100781320 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0211 1 1831260 1833320 Lja1g0211 1 1831260 1833320 ECH