Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0199 ATGGGTCTTTCTAGAGAGAAGGGATCCAACTTCTCTCTAGGCCATGAAGGGAGGAGAATCAACGACCGGAGGGAGAAGCTGGAGTCTAGTAGAGGAAATAAACGGTGGCGCTTTGACCATGCGGCGGAACCGTCGTGGAGAAAACAGCACCATGCTTCTACTCCGAGTAATGGTCGATATAGACAGGTCTCCCAACATTCCCACCAAAAACAGGGTCATGGCAGTCAAAGGGGTAGTGAGCATACTATGCGTTTTTCCCCCACTACCTTGTTCATAGATGGTCTGACAGAGAAGACATCATACGAACAAGTGAAAAATGCGTTCAAAAAATGGGGAAAACTATCTGGTGTTTTTGTGCAGAGAACCAAGAAAAGACACCGAAGGACAAAGTTTGGCTTTGTGCATTTTGTGTCTAAAGAAGCAGCGGCAAGGGCAACTAGAAATCTGAATGGTGGATCTCTAAATGGTGCCACTATTTCTGTGGCTGTGGCTAAGTACCCGACAAATGCACAAGGGGATACTCATCCTACTGCCAATAGGTGGACAAATCATGTAAGAAAAAGGGTATGGAGGAGAAAAACAGAGCCAATCTCCCAAGAAAAAGAGAGTTCCGACTATTCTTGTTGTTACAATACTAAACAAGAGGACCTGGATAGAGTACAGAGGATGGCAGTAGCATCTCTCAGGGGTGTTCGCAATATAGAAGAAATACAAAATTTCTTAATTGCAAAAGGCTACTCTAGAATAAAAGTCAAGGCACTTGGGGCTAAGGAAGTGGTACTGGAATTCGAGAATAGAGATGAAATGCTGTCTTTCTTGCTCAAGGGTGTGGAATGCCTTGCCGACAAGTGCGAGTGTATATCAGAAGCTTCAATGTTGGCAAAACCAACTAGGCATTTCATATGGGTAACACTGAGAAATGTTCCTATCGCTGCTTGGAATACCAGATTCTTTTCCTCAATTGCAGGTTTATTCGGAATCTTTGTGTGTCTGGATAAAGAAACAGAGTCCCATTCCAGGTATGACAGAGCTAGGATGCTGATAGTCTCATCGTTACCGTCGTTTCAGAGTCGCTCGATAAACATCAAAATTGATGAAGAGGTGGTGGCAGTGGCTTTGGAGATGGATATAAAGCACGAATTTTGTGAACCCCCTTTCGCTGCAGAGGAAGTTTCCGGGTTTTCATCTTCAGAAGGTAACATCGCTAACATGGCGGAGGCGGCGACCTCTGATGATTCTCGGGTTCAAGGGACCGAGGACATTGACCTACCTTCTGCTACATCTCCTGCGGCTCCGTACCTTGACGAGTCAGAGATTGTACCATGGGTTTAA 1332 0.452 MGLSREKGSNFSLGHEGRRINDRREKLESSRGNKRWRFDHAAEPSWRKQHHASTPSNGRYRQVSQHSHQKQGHGSQRGSEHTMRFSPTTLFIDGLTEKTSYEQVKNAFKKWGKLSGVFVQRTKKRHRRTKFGFVHFVSKEAAARATRNLNGGSLNGATISVAVAKYPTNAQGDTHPTANRWTNHVRKRVWRRKTEPISQEKESSDYSCCYNTKQEDLDRVQRMAVASLRGVRNIEEIQNFLIAKGYSRIKVKALGAKEVVLEFENRDEMLSFLLKGVECLADKCECISEASMLAKPTRHFIWVTLRNVPIAAWNTRFFSSIAGLFGIFVCLDKETESHSRYDRARMLIVSSLPSFQSRSINIKIDEEVVAVALEMDIKHEFCEPPFAAEEVSGFSSSEGNIANMAEAATSDDSRVQGTEDIDLPSATSPAAPYLDESEIVPWV* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0199 443 Gene3D - 30 163 IPR012677 -
Lja1g0199 443 MobiDBLite consensus disorder prediction 1 84 - -
Lja1g0199 443 MobiDBLite consensus disorder prediction 49 84 - -
Lja1g0199 443 MobiDBLite consensus disorder prediction 11 47 - -
Lja1g0199 443 SMART rrm1_1 89 162 IPR000504 GO:0003723
Lja1g0199 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Lja1g0199 443 PANTHER RNA-BINDING MOTIF PROTEIN 14B 68 216 - -
Lja1g0199 443 SUPERFAMILY RNA-binding domain, RBD 60 171 IPR035979 GO:0003676
Lja1g0199 443 MobiDBLite consensus disorder prediction 405 443 - -
Lja1g0199 443 Pfam Domain of unknown function (DUF4283) 230 348 IPR025558 -
Lja1g0199 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0199 Lja-Chr1 1733859 1735771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0199 88 165 Eukaryotic Initiation Factors Gene Family AT1G71770 34.615 1.07e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0199 K13161 - lja:Lj2g3v0911720.1 770