Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0198 ATGGCACTTCCTTCAAACCTATTACCGGATGAGGCAAGCCCGGAGTGGCTGAACAAAGGGGACAATGCGTGGCAGCTCACAGCTGCTACACTGGTTGGCCTCCAGAGCATTCCTGGGCTCGTGATCCTATACGGAAGCCTGGTGAAGAAGACATGGGCTGTGAACTCTGCTTTCATGGCCTTCTACGCCTTTGCCATGGTTCTCCTATGCTGGGTGGCGTGGGGTTTCTGCATGTCGTTTGGCGAGAAACTCGTTTTCTTCTTGGGAAAACCTGGGGTGGCATTGGATGAGAATTTCCTCTTAGGGAAAGCTTTCTTGGGGATGTTCCCCAATGCTACTATGGTGCTTTTTCAAGGCGTGTTTGCAGGAATTACGTTGATCTTGATAGCCGGTGCGTTGCTTGGAAGGATGAACATTCGCGCGTGGATGATGTTTGTTCCACTTTGGGTTAGTTTGTCGTATAGTGTCACTGCGTTTAGCATTTGGTGCCCTGATGGGTGGTTGGCGAAGCTTGGTGTCATTGATTTTGCTGGCGGTTATGTTATTCACCTCTCTGCTGGAGTTGCTGGTTTCACTGCAGCTTATTGGGTTGGTCCACGGCCAGAGAAGGAGAGAGAAATGTTTCCAGCAAACAACATGATTTTAGTGCTTGCGGGCGCTGGCCTGCTTTGGATGGGTTGGAGTGGATTTAACGGTGGAGCTCCCTTCGCGGCTAGCACAGTGGCATCGCTGGCTATTCTCAACACACACGTATGTACCTCCGCTAGCATTGTTGTGTGGGTTCTGCTCGACACTTTCTACTTTGGCAAACCCACTGTTTTTGGTGCAGTACAGGGCATGATCACTGGCCTTGTTTGCATTACACCCGCCGCAGGAGTTGTGCAGGGGTGGGCAGCGATCTTGATGGGTTTGATTTCAGGAAGCATTCCCTGGTACACCATGATGATACTCCACAACAAGGTCCCTTTCTTAAAGCAAATTGACGACCCCATGGCGGTGTTCCACACCCACGCCGTAGCCGGGGCTCTCGGCGGCATTCTCACCGGCTTCTTCGCCGTGCCTAAGCTATGCCGTCTCTTCTACATGGTGCCTGATTGGGAAAAGTACATTGGCCTCGCCTATGGCCTCCAGAACGGTGCAACTCAAGCGGGGTTGAAACAGATGGGGATCCAAGTTGTGGCCATTGTTTTCGTGATTTGCTTCAACTTTGTCTCCACTACCTTGATTTGCTTGCTTGTGAGGTTAATGGTTCCACTCAGGCTTGATTCTGATGAGTTGCAAGGTGACAAGGCAATGCATGGAGAGGAGGCTTTCAACTTGCATGGTGGTGGTGGTGATCATCATGCTGTGAAATTTGAGAAGGTGAAGCATAATAAGGTTTATGACACTCCAGAATTTTCATTCATTAACGAGTCAACGTCGTCAGTTTTTGTCAACCTTCAAATGGTGTGA 1452 0.5014 MALPSNLLPDEASPEWLNKGDNAWQLTAATLVGLQSIPGLVILYGSLVKKTWAVNSAFMAFYAFAMVLLCWVAWGFCMSFGEKLVFFLGKPGVALDENFLLGKAFLGMFPNATMVLFQGVFAGITLILIAGALLGRMNIRAWMMFVPLWVSLSYSVTAFSIWCPDGWLAKLGVIDFAGGYVIHLSAGVAGFTAAYWVGPRPEKEREMFPANNMILVLAGAGLLWMGWSGFNGGAPFAASTVASLAILNTHVCTSASIVVWVLLDTFYFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSIPWYTMMILHNKVPFLKQIDDPMAVFHTHAVAGALGGILTGFFAVPKLCRLFYMVPDWEKYIGLAYGLQNGATQAGLKQMGIQVVAIVFVICFNFVSTTLICLLVRLMVPLRLDSDELQGDKAMHGEEAFNLHGGGGDHHAVKFEKVKHNKVYDTPEFSFINESTSSVFVNLQMV* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0198 483 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lja1g0198 483 PANTHER AMMONIUM TRANSPORTER MEP2 1 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lja1g0198 483 Gene3D Ammonium transporter AmtB like domains 7 457 IPR029020 -
Lja1g0198 483 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005887
Lja1g0198 483 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005887
Lja1g0198 483 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005887
Lja1g0198 483 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005887
Lja1g0198 483 SUPERFAMILY Ammonium transporter 16 421 - -
Lja1g0198 483 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lja1g0198 483 PANTHER AMMONIUM TRANSPORTER 1 473 - -
Lja1g0198 483 TIGRFAM amt: ammonium transporter 21 437 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0198 Lja-Chr1 1729410 1731425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0198 112 465 Inorganic Solute Cotransporters AT2G38290 54.085 5.76e-124 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0198 K03320 - gmx:100782944 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0198 1 1729410 1731425 Lja1g0198 1 1729410 1731425 ECH