Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0192 ATGGAGGCAGAGAGAGACAAGTACAGCATGATCCATTTTGAAGAGACCGAGCTGCGACTCGGTCTTCCTCTGAGTGGAAAGGAAGGAGATTCCACCCTCAAGAGCACATTGAATGGAAAGAGAGTTTTTTCAGACACAAAAACTGTGGATTTAAAGCTCAATCTTTCTTCAACAAACAATGTCTTGGCCTCAGGATCTTCTTCCTCCTCTGTTTCTAAAGAGTCTAGGAACCCAGCAAAATCACCACCTGCAAAGGCACAAGTGGTTGGTTGGCCACCAGTTCGTTCATTCAGAAAGAACATTGTTAACGTTCAAAAGAGCAACAATATTAATGAAGCAGAGAAGGCCACCATCACCTCCACCGCAACTGCCAGCGGCGGCAACAACGCTGCCAACCCCGGCACGGCTTTCGTGAAGGTGAGCATGGACGGTGCACCTTACCTACGCAAGGTGGACTTGAAATTGTACAAGAGCTACCAAGAGCTCTCGGAGGCGCTGTCTAAAATGTTCAGTTCCTTCACCGTCGCCAAATGTGGCTCCCAAGGCGTGAAGGACTTCATGAATGAGAGCAAATTGATAGATCTTCTGAATGGCTCTGATTATGTGCCGACATATGAAGACAAAGATGGAGATTGGATGCTAGTGGGTGATGTCCCATGGGAGATGTTTGTGGGATCATGCAAGCGCCTGCGAATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCGAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 762 0.479 MEAERDKYSMIHFEETELRLGLPLSGKEGDSTLKSTLNGKRVFSDTKTVDLKLNLSSTNNVLASGSSSSSVSKESRNPAKSPPAKAQVVGWPPVRSFRKNIVNVQKSNNINEAEKATITSTATASGGNNAANPGTAFVKVSMDGAPYLRKVDLKLYKSYQELSEALSKMFSSFTVAKCGSQGVKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAVEKCKNRS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0192 253 ProSiteProfiles PB1 domain profile. 135 235 IPR000270 GO:0005515
Lja1g0192 253 MobiDBLite consensus disorder prediction 61 77 - -
Lja1g0192 253 Gene3D - 130 247 - -
Lja1g0192 253 Pfam AUX/IAA family 16 244 IPR033389 -
Lja1g0192 253 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 246 - -
Lja1g0192 253 MobiDBLite consensus disorder prediction 61 88 - -
Lja1g0192 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 246 IPR003311 GO:0005634|GO:0006355
Lja1g0192 253 SUPERFAMILY CAD & PB1 domains 131 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0192 Lja-Chr1 1649273 1652168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0192 139 238 B3 DNA Binding Superfamily AT3G61830 34.000 5.07e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja1g0192 AUX_IAA 8.2e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0192 K14484 - gmx:100796888 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1915 5 23627987 23629601 Lja1g0192 1 1649273 1652168 ECH
Lja1g0192 1 1649273 1652168 Lja1g0192 1 1649273 1652168 ECH