Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0191 ATGGAGGCAGCAATTGATGTGTTACCACCTAAACGCCCTGCCTCAAGTGGAATTTCTCCTCAGGGACATAAAAGACTGAAACTATCTAGTGATAGTCTGCCATACTCAGCACATGATAAAGCTGTGCCAGAGGCACCTACAAATGTTGAAGACTTCAGCAATCCATTTGCAATCTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAACCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAGTTTCCTAAACTTGTTACTCAATCATTAAACGTGGTTGTGAACCACAATGAAGAAAGTAATAAGTTGGAAAATAAAAAAGGCACCATCATGTCACATGATAAAGTAGTAGATTTGGAAGAGGAGCACACTAAGAAGGATGCTTCTGCAGCACAGCCTGTTGTGATTATTGATTCGGATGAGGAAGATGATAGAGACAAAAATTCTTCTCTTCCATTTAATGAAGTAATGTTTCCGAACTCACTCCAATCTCCTGCATTGAGGATGATGGGGTATCGTGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCTCAAATTTGAGCCAACTCGGGCTGCTAAAGATAAAACTCAGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAAATGTCAATGGCCGTAGAATGTTCGAAGGATGCTTCTGTGAATCCTCCGCCCGAGGAAGAAGTTGAAAAAGAAGACGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGCGTCATTGACCGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCATGGAATGCCAAAGCAAAAGTTGATGTATATGGAATTAATATTGCTGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAACAAATGAAGTCTCATCAAATTGAAGGGTTCAATTTTCTCGTCAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTGGTGGTGCTTCCCAAGGGAATACTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGATCTTTACACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTTTCTTGGGGTACAAGCAGTTTTCTTCAATTGTCTGTGATAATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTGCTTAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCGCGGAATGAGAATACTGATATGGTGCAGTCCCTTGCAAAGGTAAAAACACCTAGAAAAGTTGTACTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGAATCTGGTTCGGCCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCGGGCAAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAATAGCTGTTATTCAAGATTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACTGTGTTGCTTAAGCTGACCCCAAGACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGGTGAAAACTCTGTATCTGACCAAATGGTGGATGATTTAATTGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCGAAATTCTTCATGAACATTCTAAACTTGTGTGAATCATCCAACGAGAAGCTTCTGGTGTTCAGCCAATATCTCTTACCTTTGAAATATTTAGAGAGGTTAGTTATGAAATGGAAAGGTTGGAGTTTTGGGAAAGAAATCTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCATGAACAAATTCAACAATTCACCTGATGCTAAAATCTTCTTTGGTTCAATCAAGGCTTGTGGAGAGGGCATATCTTTGGTTGGGGCATCCCGAGTACTCATTTTGGATGTTCATCTGAACCCGTCAGTTACTCGTCAAGCTATTGGTCGTGCATTTCGACCAGGACAGACAAAGAAGGTCTTTGTGTACCGATTGATAGCTGCTGATTCTCCAGAAGAGGATGATCACATTACTTGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAATGGAATGAGTACTGTGGTGATAGGGCCTTCCAAGTTGAGACAGTTAGTGTCAATGAATGTGGTGATGAGCTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGTAA 2631 0.401 MEAAIDVLPPKRPASSGISPQGHKRLKLSSDSLPYSAHDKAVPEAPTNVEDFSNPFAISDFLNRLESGKFGSVTKDIEALITRKMQVLGPFFAKFPKLVTQSLNVVVNHNEESNKLENKKGTIMSHDKVVDLEEEHTKKDASAAQPVVIIDSDEEDDRDKNSSLPFNEVMFPNSLQSPALRMMGYRAPIAYHGESEDLKFEPTRAAKDKTQRDKGVYVGVQEEDEVDTEDDGLDDIWREMSMAVECSKDASVNPPPEEEVEKEDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNAKAKVDVYGINIAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKHETGKLKNISRKFKVSSMGSALYLHPRLIPVADKCGENSVSDQMVDDLIEKLDVKDGVKSKFFMNILNLCESSNEKLLVFSQYLLPLKYLERLVMKWKGWSFGKEIFGISGESSSEQREWSMNKFNNSPDAKIFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFQVETVSVNECGDELLETPMLGEDVKALYKR* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0191 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 359 538 IPR014001 -
Lja1g0191 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 838 IPR027417 -
Lja1g0191 876 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g0191 876 CDD SF2_C_SNF 674 811 - -
Lja1g0191 876 Pfam SNF2-related domain 365 579 IPR000330 GO:0005524|GO:0140658
Lja1g0191 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 668 852 IPR001650 -
Lja1g0191 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 540 IPR027417 -
Lja1g0191 876 SMART helicmild6 715 800 IPR001650 -
Lja1g0191 876 Pfam Helicase conserved C-terminal domain 689 799 IPR001650 -
Lja1g0191 876 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 17 876 IPR044567 GO:0080188
Lja1g0191 876 Gene3D - 608 859 IPR027417 -
Lja1g0191 876 Gene3D - 314 568 IPR038718 -
Lja1g0191 876 PANTHER PROTEIN CHROMATIN REMODELING 35 17 876 - -
Lja1g0191 876 SMART ultradead3 341 555 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0191 Lja-Chr1 1642746 1647826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0191 697 818 RAD5 or RAD16-like Gene Family AT5G43530 37.705 3.05e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g0191 SNF2_N 3.8e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0191 K10875 - gmx:100780454 1360.51