Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0188 ATGTCAATGTCAATGTCGAATGCGAAGAAGAAGAAGAAGATGATGGTCAAAATCAAGAGGCAGAAGCTGGAAGCATGCATGAAATGCCCTCTTTGCCGTAACCTTTTCAAAGAAGCTACCACCATTTCTCTCTGCCTCCACACCTTTTGCAGGAAGTGCATATATGAGAAACTTTCAGATGAGGAGATGGAATTCTGTCCAGTTTGCAATATTGATCTGGGGTGCCTACCAATGGAAAAGCTCAGGCCTGATCACAATTTGCAAGATATTAGGGCCATAGTATTCCCTTTTGAACGAAGAAAGATCGAAGTCCAAGAAGTTGTTCCTTCAATATCCTCACCAGGGAAAAAGAAGGAAAGATCACTTTCATCATTTGTGGTTAGTGCTCCCAAAGTTTCAACAGACACTGGCCTTACAGGAAAGAGCATTAAAACTGGTACAAGGAAGGCTGCTGCTTTTGATGTGGCTGCACAGCCTCCTCTTCCGACCCCTACTGTTGAGCATCTGCTAAATGGAATCCTTCTAAGGGTGACAGAAATGGGCCTCATCATGAAACAGCAATGGAAGACCGAGTTGGAGGGCCAAAGTGGAGGTTTTAACGATGAGTTGGGGCTGCTGAGGACAGAGAAATCATTCCTTTCTCAATGGGATAGCCGCTTCCAGGGACATGAGTTCGTTGAAAAGAACCCTGCCCTTACTGACAATGCCGGCAAATTCTACACTCTTGGAGCTGAGCAGGCTTGCCATGCCATCATAAAACAACACTCCCTGAGGTCCGCCAACTTAGGCGAGGCAATGGTAGAAGGACCAAGTGCTTTTGAGAAATCTAGGACTGCAATGGAGGGCGAGCTGGAAGTGGCGCGAAGGAGGCTGGAGAGGTATGACGAGGACATGGAAGGAATGAAACAGAAGATTTTTCAGACTGAAGAGGACAAGGAAAAGGAAATTGACAAGATGAAGGCCCAAATGGAGGAGGATATTAGGAAGGAGAGAGCCTTGGCGACCCAAGCTCAAGAGGAGGTGAAAAAAGAAGAAGATAAAGTTTCAAAGCTGACTGATGAGGTCACCAAGCTTGGCAAAGTGGTTTCGAGAAAAGAAGACGAAGTTTCAAAGCTGAATGATGAGAACACCAAGCTTGGCAAAGTGGTTTTGAAAAAAGAAGATGAAGTTTCAAAGCTGAATGATGAGATCACCAAGCTTGGCGAAGAGGTTTCCTCTCTGAAGGAAGACAACGTGGATGTCCAGATTAGTCAATTCAAGGCAGGTTACGACCAAGCTCTTAAGCACATTGTCTTCCTTCAGCCTAATTTCGATATCTCCTCTATGGCCCCATTTAATGAGATTGAGGGTGACAAGCTGGTGGACCCTTTCAAAGATGAAGATGAAGACGAGGAAGAGGAAAGATAA 1407 0.4527 MSMSMSNAKKKKKMMVKIKRQKLEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLRPDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKSIKTGTRKAAAFDVAAQPPLPTPTVEHLLNGILLRVTEMGLIMKQQWKTELEGQSGGFNDELGLLRTEKSFLSQWDSRFQGHEFVEKNPALTDNAGKFYTLGAEQACHAIIKQHSLRSANLGEAMVEGPSAFEKSRTAMEGELEVARRRLERYDEDMEGMKQKIFQTEEDKEKEIDKMKAQMEEDIRKERALATQAQEEVKKEEDKVSKLTDEVTKLGKVVSRKEDEVSKLNDENTKLGKVVLKKEDEVSKLNDEITKLGEEVSSLKEDNVDVQISQFKAGYDQALKHIVFLQPNFDISSMAPFNEIEGDKLVDPFKDEDEDEEEER* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0188 468 Pfam Zinc finger, C3HC4 type (RING finger) 28 69 - -
Lja1g0188 468 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Lja1g0188 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 120 IPR013083 -
Lja1g0188 468 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lja1g0188 468 SUPERFAMILY RING/U-box 23 90 - -
Lja1g0188 468 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 14 154 IPR044807 GO:0004842
Lja1g0188 468 SMART ring_2 29 69 IPR001841 -
Lja1g0188 468 Coils Coil 277 354 - -
Lja1g0188 468 Coils Coil 383 410 - -
Lja1g0188 468 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 14 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0188 Lja-Chr1 1622171 1625133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0188 14 149 C3H Transcription Factor Family AT2G30580 62.500 3.84e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0188 K16277 - cit:102609907 219.935