Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0187 ATGTCGAATGCGAAGAAGAAGAAGATGATGATGGTGGCCAAAGTCGAGAGGCAAACGCTTGAAGCATGCATGAAATGCCCTCTTTGCTATAAGATTTTCAGAGAAGCTACCACCATTTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGAGAAACTTTCAGATGAGGAGATGGATTGCTGTCCAGTATGCAATATTGATCTGGGGTGCATGGCAGTGGAAAAGCTCAGGCCTGACCACAATTTGCAAGATATGAGGGCCAAATTATTCCCTTTTAAGCAAAAAAAGATAAGACCTCAAGAAGTTGTTCCTTCTGTATCCCCACCAGCGAAAAGGAAGGAAAGATCACTTTCATCACTGGTGGTTAGTGCTCCCAAAGTTTCGACAAACACTGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAGGCTGCTACTTTACGTGGATGCAATTTTAACCTTGAAGAATCCATAAAGACTGAAGGAAAACATGGTGAACATAATTTGGTTCCTTCCACAGCTGAGCCTTCTAAGAAGCATAGGCCCAATGAAGATACAAAGAACAGTATGGACCTTACAGAAGAGAAGGTTGATCTCTGGACACCCTTGCACTGTCTTCTTGAAGTAGCCAATAGAACAAAGTTCTCCAAGTCAAATTCACAAGGGACTCCTCATGCCAAATTAGAAGGTAATCTAGCTACTCCTCAAGGTGGACAAAAGAAGTCTGAAACTACAACCAAATCAGAGACACTTGCTTCTGTCCAGAGTGCCAAAACCAAGGATAATGGGCACAAAGCAAAGCTTGGAGATGATAAGGATGGAAAAACCTTTCCTTCAGGACCAAGGAAGCGAAGAAGGGTGCGTCCTGATAGTCAGAAAAAAAAAGCAGCATCCAAGATCATGTTAGATGCAACAGAGAGCAGATGCAACGGGGAAAACAGTGCTATTTGGTTTTCATTAGTTGCTTCAGAAGACCAGAAAGGAGAATTTCCCTTGCCTCAGATTTCAGCATGTTATTTAAGAATAAAGGATGGTAATGTTCCCGTCTCATTTATTCATAAGTATCTTGCGAAGAAACTTAATCTTGCCAGCGAAGCAGAGGTTGTGATAACATGTAGGGGCCAGTCCTTGCTCCCATCTTTGAAACTGCATAACATAGTAGATTTGTGGTTGTGTACAACACCATCCTCAAAAAAGATAAGGGCGTCTGTGGGATCCTCGGCTAAGGAGTTTGTGATGGTTTTGTCATATTCTCGAAATCCCTTACCTCTGTGA 1284 0.4229 MSNAKKKKMMMVAKVERQTLEACMKCPLCYKIFREATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCMAVEKLRPDHNLQDMRAKLFPFKQKKIRPQEVVPSVSPPAKRKERSLSSLVVSAPKVSTNTGFTGKRTKTSTRKAATLRGCNFNLEESIKTEGKHGEHNLVPSTAEPSKKHRPNEDTKNSMDLTEEKVDLWTPLHCLLEVANRTKFSKSNSQGTPHAKLEGNLATPQGGQKKSETTTKSETLASVQSAKTKDNGHKAKLGDDKDGKTFPSGPRKRRRVRPDSQKKKAASKIMLDATESRCNGENSAIWFSLVASEDQKGEFPLPQISACYLRIKDGNVPVSFIHKYLAKKLNLASEAEVVITCRGQSLLPSLKLHNIVDLWLCTTPSSKKIRASVGSSAKEFVMVLSYSRNPLPL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0187 427 MobiDBLite consensus disorder prediction 238 262 - -
Lja1g0187 427 SMART ring_2 26 66 IPR001841 -
Lja1g0187 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 119 IPR013083 -
Lja1g0187 427 MobiDBLite consensus disorder prediction 218 303 - -
Lja1g0187 427 Gene3D - 299 401 - -
Lja1g0187 427 MobiDBLite consensus disorder prediction 162 195 - -
Lja1g0187 427 SUPERFAMILY RING/U-box 20 92 - -
Lja1g0187 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 11 422 IPR044807 GO:0004842
Lja1g0187 427 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Lja1g0187 427 MobiDBLite consensus disorder prediction 263 288 - -
Lja1g0187 427 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 11 422 - -
Lja1g0187 427 Pfam Zinc finger, C3HC4 type (RING finger) 25 66 - -
Lja1g0187 427 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0187 Lja-Chr1 1616112 1620084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0187 11 346 C3H Transcription Factor Family AT2G30580 43.889 2.96e-79 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0187 K16277 - gmx:100783999 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0187 1 1616112 1620084 Lja5g1563 5 16559729 16564936 ECH
Lja1g0187 1 1616112 1620084 Lja1g0187 1 1616112 1620084 ECH