Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0175 ATGGGACTAGTGGAGGTTCGATTTTGCAATCTGTCAGATAAAAGACTCTATCATACTCTACTAGACCAATCTCTTGAGGGGAGTACTCCAGTGAATATTATTGTGGATTCTCATGTCTGGGTTGAAGATCATGAGGTTTGCTGGATTGATGGACAGGTTTCCAAAATCAATGGTCAGGATGCTGAAATTGAAACTACCAGTGGAAAGAAGGTTGTCACAAAGTTATCAAAATTATATCCCAAAGATATGGAAGCTGCTCCTGGTGGAGTGGATGATATGACTAAGTTGTCCTATTTGCATGAGCCAGGAGTCCTGCAGAACTTAAAGATTAGATATGAGTTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAAACTACCTCATCTATATGATGCACACATGATGCATCAATACAAGGGAGCACCATTTGGAGAGTTAAGCCCTCATGTATTTGCCGTTGCTGATGTTGCATATAGGGCAATGATTAACGAAAGAAAAAGCAATTCAATTCTGGTCAGTGGAGAAAGTGGAGCTGGTAAAACTGAAACCACAAAAATGCTTATGCAGTACCTTGCTTACTTAGGTGGTAGGGCTGCCACCGAAGGACGAACAGTTGAACAGCAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGTAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAACGCAATTACCACTGTTTTTATCTTCTCTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAACTAGGACATCCTAAAACATTTCATTACCTAAATCAGTCAAAATGCTTTGAACTGGCTGATGTAAGTGATGCTCGTGAGTATCTTGCAACTCGGAGAGCTATGGATATTGTTGGAATAAGCCCAAAAGAGCAGGAAGCTATTTTTAGAGTTGTTGCTTCCATTCTTCATCTTGGTAATATTGAATTTACCAAAGGAAAGGAGGTTGATTCATCAGTTCCTAAGGATGATAAAGCCAAATTCAGCTTAAAAACAACTGCTGAGCTCCTCATGTGTAATGCTGGTGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGGAGCCTGGATCCCCAAAGTGCAGCAGTCAGCAGAGATGGCTTGGCAAAAACACTTTATTCAAGGCTGTTTGACTGGTTGGTGGACAAGATTAATAATTCAATTGGACAAGACGCCACTTCTAAATCTTTGATTGGGGTCCTTGATATATATGGTTTTGAAAGCTTTAAATGTAACAGCACGTGTTCAAAATGGAACAAGAAGAATATACAAAGGAGCAGATTGATTGGAGTTACATTGAATTTGTTGACAACCAAGATCATGTTTCCAAAGTCAACGCATGAAACTTTCGCTAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTGTTAAGCCAAAATTATCTCGAACAGATTTCACCATTTCTCATTATGCTGGCGAGGTGCTGTACCAGTCAGACCATTTTTTAGATAAAAACAAGGACTATGTGGTTCCGGAACATCAAGATTTATTGGGTGCTTCCAAGTGTCCTTTTGTAGCTGGACTTTTTCCTCCACTTCCAGAAGAGACATCAAAATCTTCAAAATTTTCTTCAATCGGTTCTCGTTTTAAGCTGCAACTACAGAGCCTAATGGAAACACTAAACTCAACAGAGCCTCATTACATTAGATGTGTGAAGCCAAACAACGTCCTCAAGCCTGCAATTTTTGAGAATGTCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACCCGTCGCGCTTTCTTTGAGTTTATAAACCGATTTTCCCTCCTTGCCCCCGAGGTTACAGAAGCAAATCATGATGAGAAGACTGTTTGCAAAAAAATTCTAGAAAAGATGGGGCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGGGCTCAGGTACTAAGTAATGCAGCAAAAACTATCCAAAGGCGTATACGAACCCATCAAGCTCGTAAACATTATATCGCATTACGAAAGAAGACCATATATGTGCAGTCTCTGTGGAGAGGAAGACTTGCATGCAAACTTTATCAGGGCCTGAGAAGGGAGGCTGCTGCTATTAAAATTCAGAAGAACATACGCAGACATGATGCTAGGAAAGCCTATACTAAACTACAAGCATCAGTACTTACTCTTCAAACAGCTTTGAGGGCAATCTCCGCCCGTAAGGAGTTCAACTTTAGGAAACAGACTAAAGCTTCCACCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCTTCTTCATATTATAAGAGGCTAAAGAAAGGTGCAATAATGACACAATGCAAATGGAGGGGGCGCATGGGAAGGAAAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGTGCGCTTAAAGAAGCAAAGGACAAGCTTGAAAAACGGGTGGAGGAACTCACTTATCGTGTCCAACTAGAAAAAAGTTTAAGGACCAACCTAGAAGAATCCAAAGCACAAGAGATAACAAAACTGCAGAATTCACTGAAGGAGATGCAGAGCAGAGTTGATGAAACTAATGCTTTGCTTGTAAAGGAGCGAGAGAATGCAAAGAAAGCTATTGAAGAAGCACCTGCTGTTGTTCAAGAAACTAAGGTTATTGTTGAAGACACACAGAAGATTGAAGCACTAACAGCGGAAGTTGAGAGCCTAAAGACTTTGCTAGAGTCAGAGAGACAAAAAGCTGATGATTTTGAAAAGAAATATAATGAAGCCCAAGCTTCTCTTGAAGAAATGAGTAAAAAATTTGAAGACACAGAGAAGAAGGCCCGTCAGTTCCAAGAATCAATGACCAGGCTAGAAGAGAAGATTGCTAATTTAGAATCGGAGAATAAGGTTCTACGCCAACAAGCTGTGTCTATAGCACCCAATAAGATGTTTTCAGCACGCACCAGATCAAGTATTCAGGATATGCATAGCCCATCAATGAACCACAGAGAATCCTCTGATTTGGAGGATAAACCACAGAAGTCACTGAATGAGAAACAACAGGAGAACCAAGAGTTGCTCATTAGATGTATTGCACAACACTTAGGCTTTGCTGGGAATAGACCAGTTGCTGCCTGTATCATATTCAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACTAGCGTTTTTGATCGTATAATCCAAACTATTGGCCATGCAATTGAGACTCAGGAGAACAATGAAGTTTTGGCTTATTGGTTATCCAATGCTTCTACACTTCTATTGTTGCTCCAGCGAACACTTAAAGCAAGTGGTGCTGCTGGCATGGCTCCTCAACGCCGTCGTTCTTCCTCAGCAACCCTGTTTGGGAGGATGACACAAAGTTTCCGTGGTAATCCGCCTGGAGTCAATATTTCCCTAATCAATGGTAGCATGAGTGGCGGAGTAGATACAGTAAGACAAGTTGAAGCCAAGTACCCAGCTCTTCTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATATATGGAATGATTCGGGATAACTTGAAGAAAGAAATTTCTCCTTTGCTTGGACTATGCATCCAGGCACCAAGAACATCCAGGGCAAGCTTGGTTAAGGGTTCATCACGTTCAGTTGCAAACACTGAAGCCCAGAAAGCTTTGATTGCTCACTGGCAGGGTATAGTTAAGAGTCTTGGGAACTTCTTAAATACTTTGAAGACAAATCACGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACTCAAATATTTTCTTTTATCAATGTCCAACTTTTCAATAGTCTTCTTTTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTGAAAGCTGGTTTGGCTGAATTGGAACATTGGTGTTTTAAGGCGACGGATGAGTATGCAGGTTCAGCGTGGGATGAGCTCAAACATATTAGACAAGCTATTGGATTTCTGGTCATACACCAGAAACCAAAGAAAACGCTGGATGAAATAAGCCATGACCTTTGCCCGGTTCTCAGTATACAGCAGCTATATCGAATTAGCACCATGTACTGGGATGACAAGTATGGCACGCATAGCGTGTCCCCTGATGTCATCTCTAATATGCGAGTCTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCAGTGGATGACATATCAAAGTCAAAGGAACAGATAGATATATATGATGTAGAGCCTCCACCACTAATTCGAGACAACTCTGGCTTTAGTTTCTTGTTGCCCCGTGCAGACTGA 4506 0.4086 MGLVEVRFCNLSDKRLYHTLLDQSLEGSTPVNIIVDSHVWVEDHEVCWIDGQVSKINGQDAEIETTSGKKVVTKLSKLYPKDMEAAPGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQKLPHLYDAHMMHQYKGAPFGELSPHVFAVADVAYRAMINERKSNSILVSGESGAGKTETTKMLMQYLAYLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGHPKTFHYLNQSKCFELADVSDAREYLATRRAMDIVGISPKEQEAIFRVVASILHLGNIEFTKGKEVDSSVPKDDKAKFSLKTTAELLMCNAGALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTLYSRLFDWLVDKINNSIGQDATSKSLIGVLDIYGFESFKCNSTCSKWNKKNIQRSRLIGVTLNLLTTKIMFPKSTHETFANKLYQTFKNHKRFVKPKLSRTDFTISHYAGEVLYQSDHFLDKNKDYVVPEHQDLLGASKCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEVTEANHDEKTVCKKILEKMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKTIQRRIRTHQARKHYIALRKKTIYVQSLWRGRLACKLYQGLRREAAAIKIQKNIRRHDARKAYTKLQASVLTLQTALRAISARKEFNFRKQTKASTIIQARWRCHKASSYYKRLKKGAIMTQCKWRGRMGRKELRKLKMAARETGALKEAKDKLEKRVEELTYRVQLEKSLRTNLEESKAQEITKLQNSLKEMQSRVDETNALLVKERENAKKAIEEAPAVVQETKVIVEDTQKIEALTAEVESLKTLLESERQKADDFEKKYNEAQASLEEMSKKFEDTEKKARQFQESMTRLEEKIANLESENKVLRQQAVSIAPNKMFSARTRSSIQDMHSPSMNHRESSDLEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPVAACIIFKCLLHWRSFEVERTSVFDRIIQTIGHAIETQENNEVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGNPPGVNISLINGSMSGGVDTVRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKTNHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCFKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSKEQIDIYDVEPPPLIRDNSGFSFLLPRAD* 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0175 1501 SMART DIL_2 1319 1426 IPR002710 -
Lja1g0175 1501 ProSiteProfiles Dilute domain profile. 1131 1444 IPR002710 -
Lja1g0175 1501 MobiDBLite consensus disorder prediction 1054 1083 - -
Lja1g0175 1501 ProSiteProfiles IQ motif profile. 841 870 IPR000048 GO:0005515
Lja1g0175 1501 Pfam DIL domain 1320 1423 IPR002710 -
Lja1g0175 1501 ProSiteProfiles IQ motif profile. 722 749 IPR000048 GO:0005515
Lja1g0175 1501 Gene3D - 654 720 - -
Lja1g0175 1501 SMART MYSc_2a 83 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 ProSiteProfiles IQ motif profile. 818 844 IPR000048 GO:0005515
Lja1g0175 1501 CDD MYSc_Myo11 102 707 IPR036018 -
Lja1g0175 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 772 870 IPR027417 -
Lja1g0175 1501 Gene3D Kinesin motor domain 611 649 IPR036961 -
Lja1g0175 1501 Coils Coil 903 944 - -
Lja1g0175 1501 Coils Coil 955 1038 - -
Lja1g0175 1501 Gene3D - 491 610 - -
Lja1g0175 1501 Coils Coil 864 898 - -
Lja1g0175 1501 Gene3D - 278 336 - -
Lja1g0175 1501 Gene3D - 772 819 - -
Lja1g0175 1501 Gene3D - 721 771 - -
Lja1g0175 1501 Gene3D - 820 869 - -
Lja1g0175 1501 MobiDBLite consensus disorder prediction 1064 1082 - -
Lja1g0175 1501 Pfam IQ calmodulin-binding motif 724 742 IPR000048 GO:0005515
Lja1g0175 1501 Pfam IQ calmodulin-binding motif 772 790 IPR000048 GO:0005515
Lja1g0175 1501 Pfam IQ calmodulin-binding motif 819 839 IPR000048 GO:0005515
Lja1g0175 1501 Pfam Myosin head (motor domain) 90 471 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 Pfam Myosin head (motor domain) 491 707 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 34 83 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 PRINTS Myosin heavy chain signature 455 483 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 PRINTS Myosin heavy chain signature 118 137 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 PRINTS Myosin heavy chain signature 222 249 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 PRINTS Myosin heavy chain signature 175 200 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 Gene3D Kinesin motor domain 91 464 IPR036961 -
Lja1g0175 1501 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Lja1g0175 1501 PANTHER MYOSIN 31 472 - -
Lja1g0175 1501 PANTHER MYOSIN 489 1498 - -
Lja1g0175 1501 CDD MyosinXI_CBD 1082 1467 IPR037975 GO:0007015
Lja1g0175 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 773 IPR027417 -
Lja1g0175 1501 Gene3D Myosin VI head, motor domain, U50 subdomain 555 588 - -
Lja1g0175 1501 Gene3D Myosin VI head, motor domain, U50 subdomain 338 448 - -
Lja1g0175 1501 ProSiteProfiles Myosin motor domain profile. 88 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 ProSiteProfiles IQ motif profile. 745 774 IPR000048 GO:0005515
Lja1g0175 1501 ProSiteProfiles IQ motif profile. 793 822 IPR000048 GO:0005515
Lja1g0175 1501 SMART iq_5 769 791 IPR000048 GO:0005515
Lja1g0175 1501 SMART iq_5 721 743 IPR000048 GO:0005515
Lja1g0175 1501 SMART iq_5 817 839 IPR000048 GO:0005515
Lja1g0175 1501 SMART iq_5 792 814 IPR000048 GO:0005515
Lja1g0175 1501 SMART iq_5 744 766 IPR000048 GO:0005515
Lja1g0175 1501 SMART iq_5 840 862 IPR000048 GO:0005515
Lja1g0175 1501 Pfam Myosin N-terminal SH3-like domain 37 76 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja1g0175 1501 PANTHER MYOSIN-9 31 472 - -
Lja1g0175 1501 PANTHER MYOSIN-9 489 1498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0175 Lja-Chr1 1492448 1506146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0175 28 1501 Myosins gene family AT1G54560 79.006 0.0 2509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0175 K10357 - gmx:100816792 2526.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0175 1 1492448 1506146 Lja5g2091 5 28330500 28349441 PCT