Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0169 ATGTCATCTTTGCCTGCTCTTCACTCTCCCCTTGAGAACAAGTATATGAAGCCACCCGATTCTTTCCTTGCAAGAGATCTGGCTGCAAATCCTGCCTCAAAACAAGCTACATCATCGAATATGACCAGAAGTGGTGAACAGATGTTTTCATCCCCTGCTGAATGTCCTGGTGATATCCGCTTTCATGCTGTTTCACAGCATGACAGGCAATATCGAGATTCTCCATTCATTTCTCCAACATTAGGTGGCAATGTGACCTCCGAAATACATTCAACGGCATTGATTTCTCACCCTCAAGAAAACGATATTTCCTGGGGACCGGATCCATTTCAGGATATTCTTAGTTTTCCTGACAATGTTTTGGTCCAGAATGATCAAGTGGAAAACGGTGCTTGTTACATGAATGATGACAATGTCAAGAGATCTGATTTTGGAGAGTGGGTTGATCAACTAATGACAATTGATGATTCGCAGCACCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTAGCAGAACCAAAGCCAAAGGCAATCCAGGTTTCCCCGCTGCAGCAGCTATCATCTGGAGAAGTTAGTGGTCTTTCTAATTCAGCATCAACTGCTTCACAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCGGTCAATCACCTTGGTGGTAGTGAGAAGGCTACGCCAAAGGGGGTTTTGAATCGGATGAAAGTCGAGGGCCTTACCATCTATCATGTAAAAAGCCACCTACAGAAATATAGAACCGCTAGATACAAACCTGAGTCATCAGAAGGAACTTCTGAGGCAAAAATTACTTCAATCGATGAAATGAAATCGTTAGACTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGGTTACAGATGGAACTCCAGAAGCGGCTTCACGAACAACTTGAGATTCAACGAAACTTACAGATTCAAATTGAAAACCAAGGTAAACATCTGCAGATGATGTTTGAGCAACAGAGAGGAATGGTTGAGAGCAAGGTTAAGGGCCCCTCCTCCCCTTCGGATGTGCCTTCTGCTGCACTATCAGACACGGCGCTACCTTCTTCTCCAATACACAATTTAGAAACCTCAAATGAGGAACATGACAAGTTAACAAGCAATAATAGCAATCTGAAAATCATGCCTGAAGAAAGTTCCAAGGATGCAAGCAACAAGCAAATAGATGGTGGAGCTGAAGTTACCAACGAAGATGAAGCAGTAGATGCAGCACCACCCCCAAAACGGGCAAAGATTTGA 1284 0.4369 MSSLPALHSPLENKYMKPPDSFLARDLAANPASKQATSSNMTRSGEQMFSSPAECPGDIRFHAVSQHDRQYRDSPFISPTLGGNVTSEIHSTALISHPQENDISWGPDPFQDILSFPDNVLVQNDQVENGACYMNDDNVKRSDFGEWVDQLMTIDDSQHPNWSQLLGDDNVAEPKPKAIQVSPLQQLSSGEVSGLSNSASTASQSKPRMRWTPELHEAFVEAVNHLGGSEKATPKGVLNRMKVEGLTIYHVKSHLQKYRTARYKPESSEGTSEAKITSIDEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQRGMVESKVKGPSSPSDVPSAALSDTALPSSPIHNLETSNEEHDKLTSNNSNLKIMPEESSKDASNKQIDGGAEVTNEDEAVDAAPPPKRAKI* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0169 427 MobiDBLite consensus disorder prediction 31 49 - -
Lja1g0169 427 Gene3D - 205 264 - -
Lja1g0169 427 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 427 - -
Lja1g0169 427 MobiDBLite consensus disorder prediction 337 427 - -
Lja1g0169 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Lja1g0169 427 Pfam MYB-CC type transfactor, LHEQLE motif 293 336 IPR025756 -
Lja1g0169 427 Coils Coil 294 314 - -
Lja1g0169 427 MobiDBLite consensus disorder prediction 183 209 - -
Lja1g0169 427 MobiDBLite consensus disorder prediction 30 51 - -
Lja1g0169 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 260 IPR006447 GO:0003677
Lja1g0169 427 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 427 IPR044848 GO:0003700
Lja1g0169 427 MobiDBLite consensus disorder prediction 183 208 - -
Lja1g0169 427 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Lja1g0169 427 MobiDBLite consensus disorder prediction 347 370 - -
Lja1g0169 427 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0169 Lja-Chr1 1458037 1462709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0169 2 359 G2-like Transcription Factor Family AT4G28610 43.041 2.59e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g0169 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0169 - - mtr:MTR_7g115530 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0169 1 1458037 1462709 Lja5g1592 5 16997732 17001349 ECH
Lja1g0169 1 1458037 1462709 Lja1g0169 1 1458037 1462709 ECH
Lja1g0169 1 1458037 1462709 Lja5g1592 5 16997732 17001349 PCT