Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0164 ATGGCAAAGACTCCTTGTTGTGAGAGGATGGGGATGAAGAAGGGACCTTGGACTGCTGAGGAAGATCACATATTGATTTCTCATATTCAAACATATGGCCATGGAAACTGGCGTGCTCTTCCTAAACAAGCAGGTTTGTTGAGGTGTGGGAAAAGTTGTAGGCTTCGATGGATAAATTACTTGAGACCAGATATCAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTACATCAACTTCTAGGAAATAGATGGTCTACTATTGCGGCAAGATTACCAGGACGAACAGACAATGAAATTAAGAACTTTTGGCATACACATTTGAAGAAGAGGGTGGAGAGAGGTGAAGTGCACGCAGCCAATACCTCTTCACATACCTTGCAAGATGGTTCAGGCACTCTATTAGCTATGCCACAAGTACTAGCTGTGGATGCATCAAATGCTGCTTCTATTGTCAATTATGGTTCTGCCTCAGGGAAGAATCCACCTTGTGATACTTCAGGAGAAACCATGGGCAATCATGGTTCCAATCAGATCAGTGAAGAAATGGAATTTTGGTACAACATATTCATCAAATCAGGACAGCCATCATGA 606 0.4241 MAKTPCCERMGMKKGPWTAEEDHILISHIQTYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHQLLGNRWSTIAARLPGRTDNEIKNFWHTHLKKRVERGEVHAANTSSHTLQDGSGTLLAMPQVLAVDASNAASIVNYGSASGKNPPCDTSGETMGNHGSNQISEEMEFWYNIFIKSGQPS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0164 201 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g0164 201 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g0164 201 Gene3D - 13 66 - -
Lja1g0164 201 CDD SANT 69 112 IPR001005 -
Lja1g0164 201 PANTHER MYB TRANSCRIPTION FACTOR 1 199 - -
Lja1g0164 201 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 199 - -
Lja1g0164 201 CDD SANT 16 61 IPR001005 -
Lja1g0164 201 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g0164 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g0164 201 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g0164 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g0164 201 SMART sant 13 63 IPR001005 -
Lja1g0164 201 SMART sant 66 114 IPR001005 -
Lja1g0164 201 Gene3D - 69 116 - -
Lja1g0164 201 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0164 Lja-Chr1 1429529 1430435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0164 1 194 MYB Transcription Factor Family AT2G31180 46.154 1.08e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g0164 Myb_DNA-binding 4.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0164 K09422 - gmx:102663040 297.745