Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0162 ATGAGGATTATGATCAAGGGCGGTGTTTGGAAGAACACCGAAGATGAAATCCTCAAAGCTGCTGTTATGAAATATGGTAAGAATCAGTGGGCTCGAATCTCTTCCCTTCTCGTTCGTAAATCTGCCAAACAGTGCAAAGCTCGTTGGTACGAGTGGCTCGATCCTTCCATCAAAAAGACTGAGTGGACTAGAGAAGAGGATGAGAAACTGCTGCATCTTGCGAAGCTTATGCCGACGCAATGGAGAACAATTGCTCCGATTGTTGGCCGTACGCCTTCGCAGTGTCTTGAACGGTATGAGAAACTGCTTGATGCTGCTTGTGTGAAGGATGATAATTATGAGCCGGGTGATGATCCGCGGAAACTGCGTCCTGGGGAGATTGATCCGAATCCTGAGTCGAAGCCTGCGCGTCCTGATCCGGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCGCGAGCTCGGTTAGCGAATACTAAAGGGAAGAAAGCTAAAAGGAAAGCTAGGGAGAAGCAACTCGAGGAAGCTAGGAGGCTTGCTTCTTTGCAGAAGAAGAGAGAACTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAGGAGGAAAAGGAGAGGGATAGACTATAATGCTGAAATTCCCTTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTCGCTGATGAAGATAGACCTGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAGCTTGAGGGAAAAAGAAGGGTTGATGTTGAAGCACAGCTAAGAAAGCAAGACATTGCCAAGAATAAAATTGCTGAGAGGCAAGATGCTCCGTCTGCTATTCTACACGCCAACAAGCTGAATGACCCTGAAACAGTAAGGAAAAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCATGAATTGGATGAGATTGCAAAGTTGGGTTATGCCAGTGACCTTGCAAGCAGTGAGGAACTCACAGAAGGTAGTAGTGCTACGCGTGCTCTTCTAGCTAATTATGCACAAACCCCCAGCCAAGGAATGACACCTTTAAGAACTCCTCAGAGAACACCAGTTGGTAAAGGAGATGCTATCTTGATGGAAGCTGAAAATCTAGCCAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGATAACCCAGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCTGACTCCAAACCCAATGCTGACTCCCTCTGCAACTCCTGGAAGTGCAAGCCTTACTCCCAGAAGTGGTATGACACCATCAACTTCAAGGGATGGCTTTTCTGTTGGCATGACTCCAAAGGGAACCCCGCTTAGGGATGAGCTACATATTAATGAAGACATGGATATGCATGAAAGTGCTAAACTTGAGCTACGGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCAAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATGTTGATGAACCTGAGGAGAAGATTGAAGAGGACATGTCTGATAGAATGGCTAGGGAGAAGGCAGAAGAAGAGGCACGGCAACAGGCATTACTTAGAAAACGATCAAAAGTACTTCAAAGGGGACTTCCTAGGCCTCCTGCTGCATCTTTGGAGCTTATTAGAAACTCCTTAATAAGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATAGGAAAAGAGCTCCTAACTTTATTGGATCATGACAATGCTAAGTATCCACTCGATGAGACAGCGAGTAAGGAGAAGAAAAAAGGAGCCAAGCATGTAGCAAATGGGCCTGCTGTCCCTATGATAGAAGATTTTCAGGATGATGAATTGAAAGATGCTGATCATCTGATAAAGGATGAAGCTCAGTATCTCCGTGTGGCAATGGGGCATGAAAGTGATTCCCTTGACGATTTTGTTGAAGCTCATACAACTTGCATTAATGATTTAATGTACTTTGTCACCCGTAATTCTTATGGTCTATCAAGTGTTGCTGGAAACATGGAAAAGCTAGCTGCCTTGCAGAATGAATTTGAGAATGTGAGAAGCAAGTTGGAGGATGGTAAGGAGAAGATGGTGCGCCTCGAGAAGAAGGTGACAGTGCTCACTCAAGGCTACGAGATGAGGGCAAAAAAAAGTCTTTGGCCGCAAATTGAGGCCACTTTCAAGCAAATGGACATAGCTGCAACAGAATTTGAGTGTTTTCAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCAACTCACAGGATAAACAATATTTGGGCTGAAGTACAAAAGCAAAAGGAACTGGAGAAAACCTTACAAAAGAGATATGGGGATAATATGGCAGAGTTGGAAAGGATACAAAATATTATGGACCAGTTCAGGTTACAAGCACAACAGCAAGAAGAAATTGAAGCACAAAACCATGCACTCGAGTCCTCTGAAGCCGCAGCTGATAAAATTGATGTGCAGGGTACAGAGAATCATGAAGCCACGCCCCTCTCAGTTGACCAGCAAGTAGACATTGTGCAAGATCAGGTTATTTCTAGCTCCATAAATGATATGGATGTGGACTCTTGTAAGGAAGATAAGGCGCACAACACTGACATTAAGTTGCCAGATGTACCTGCTGCAGCGGATGACAGTGGAAACGTGGCAGAAGGTAATAACATTGACAACAGAGAGATCACACTAGATAAGAGCGTTGCAGTGGAAATTGGCAGTATTCAGGCAAATGGGAAGGATAGAGATGTGGAGAATCCAGATGAGGTTGTGAATGCTGTAGTTGACAAACCGGATGAGGATGTGAAGGCTGTAGACCAACCTGATAGCACAAGAGAAACCACCCTTGATGAGGGGGATAACATACAAGTTGCTGATGGTAAAAGGGAGGAGGTAAATTAG 2946 0.4487 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAERQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELDEIAKLGYASDLASSEELTEGSSATRALLANYAQTPSQGMTPLRTPQRTPVGKGDAILMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPKKKEILTPNPMLTPSATPGSASLTPRSGMTPSTSRDGFSVGMTPKGTPLRDELHINEDMDMHESAKLELRRQADMRRSLRSGLSSLPQPKNEYQIVMQPVPEDVDEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRGLPRPPAASLELIRNSLIRADGDKSSFVPPTSIEQADEMIGKELLTLLDHDNAKYPLDETASKEKKKGAKHVANGPAVPMIEDFQDDELKDADHLIKDEAQYLRVAMGHESDSLDDFVEAHTTCINDLMYFVTRNSYGLSSVAGNMEKLAALQNEFENVRSKLEDGKEKMVRLEKKVTVLTQGYEMRAKKSLWPQIEATFKQMDIAATEFECFQALQKQEQLAATHRINNIWAEVQKQKELEKTLQKRYGDNMAELERIQNIMDQFRLQAQQQEEIEAQNHALESSEAAADKIDVQGTENHEATPLSVDQQVDIVQDQVISSSINDMDVDSCKEDKAHNTDIKLPDVPAAADDSGNVAEGNNIDNREITLDKSVAVEIGSIQANGKDRDVENPDEVVNAVVDKPDEDVKAVDQPDSTRETTLDEGDNIQVADGKREEVN* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0162 981 CDD SANT_CDC5_II 55 106 - -
Lja1g0162 981 Gene3D - 5 56 - -
Lja1g0162 981 Pfam pre-mRNA splicing factor component 406 656 IPR021786 -
Lja1g0162 981 Coils Coil 798 831 - -
Lja1g0162 981 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lja1g0162 981 MobiDBLite consensus disorder prediction 409 439 - -
Lja1g0162 981 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 800 - -
Lja1g0162 981 Gene3D - 57 113 - -
Lja1g0162 981 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lja1g0162 981 MobiDBLite consensus disorder prediction 941 964 - -
Lja1g0162 981 Coils Coil 691 718 - -
Lja1g0162 981 MobiDBLite consensus disorder prediction 941 981 - -
Lja1g0162 981 MobiDBLite consensus disorder prediction 377 457 - -
Lja1g0162 981 Coils Coil 167 187 - -
Lja1g0162 981 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lja1g0162 981 SMART sant 58 105 IPR001005 -
Lja1g0162 981 SMART sant 6 55 IPR001005 -
Lja1g0162 981 MobiDBLite consensus disorder prediction 110 150 - -
Lja1g0162 981 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lja1g0162 981 Pfam Myb-like DNA-binding domain 10 70 - -
Lja1g0162 981 CDD SANT 10 53 IPR001005 -
Lja1g0162 981 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0162 Lja-Chr1 1417725 1422579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0162 1 837 MYB-Related Transcription Factor Family AT1G09770 75.624 0.0 1234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g0162 Myb_Cef 9.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0162 K12860 - gmx:100790369 1429.08