Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0154 ATGGGTGGTGAAGAAGAAGCTCTGGAGAAGAAACACTACCAACCCATGGAGGAGCTTGGCCGAGGCAAATTTGGCACCGTCTTCCGGTGCTTCCACCAGGAATCAAACAAATCCTACGCCGTCAAAGTCATCAACAAGAACCTCCTCACCGGTTCCACAGACCGCCAGTGCCTTGAAAGCGAGTCCAAATTCATGACCTTCCTCTCACCGCACCCTAATATTCTTCAAATCTTCGAAACCTTTGAAGACGCCGATTACCTCTGCATGGTCCTCGAGCTTTGCGGCCCCCACGCCCTCATCGACAAGCTTCCATTGCCGGAGCCGGAGGCATGCTCCGTCATGAAGAGCCTTCTGGAAGCGCTGGCGCACTGCCACCGCCTCGGAATCGCACACCGTGACGTGAAACCGGACAACATCCTGTTTGATGAGTCGGGAAACCTTAAGGTTGCGGACTTTGGCTTTGCTGAGTGGTGCGGCGAGGGGAGGAGCATGAGCGGGGTGGTGGGCACGCCGTATTACGTGGCGCCGGAGGTGGTGATGAGGAAGGAGTACACTGAGAAAGTGGATGTTTGGAGCGCTGGCGTGGTTCTTTACGCAATGCTGTCCGGAATTCCGCCGTTTGACGGAGACTCTCCGGAGGATATTTTTGCGGCTGTGGCGAGGGCCAATCTCAGGTTTCCGACGAGTATTTTCAGCTCTGTTTCGGCACCTGCTAAGGATCTCCTCAGGAAGATGATTTGTCGAGATCCTTCAAGAAGAATTTCTGCAGAACAAGCCTTGAGGCATCCATGGATCTTGAGTGGAGGTGTGATTAATCAGTGA 822 0.5401 MGGEEEALEKKHYQPMEELGRGKFGTVFRCFHQESNKSYAVKVINKNLLTGSTDRQCLESESKFMTFLSPHPNILQIFETFEDADYLCMVLELCGPHALIDKLPLPEPEACSVMKSLLEALAHCHRLGIAHRDVKPDNILFDESGNLKVADFGFAEWCGEGRSMSGVVGTPYYVAPEVVMRKEYTEKVDVWSAGVVLYAMLSGIPPFDGDSPEDIFAAVARANLRFPTSIFSSVSAPAKDLLRKMICRDPSRRISAEQALRHPWILSGGVINQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0154 273 ProSiteProfiles Protein kinase domain profile. 13 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0154 273 CDD STKc_CAMK 12 264 - -
Lja1g0154 273 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 6 270 - -
Lja1g0154 273 Gene3D Transferase(Phosphotransferase) domain 1 98 270 - -
Lja1g0154 273 SMART serkin_6 13 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0154 273 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lja1g0154 273 SUPERFAMILY Protein kinase-like (PK-like) 11 267 IPR011009 -
Lja1g0154 273 Gene3D Phosphorylase Kinase; domain 1 4 95 - -
Lja1g0154 273 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 270 - -
Lja1g0154 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lja1g0154 273 Pfam Protein kinase domain 13 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0154 Lja-Chr1 1344628 1346300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0154 10 268 EF-hand Containing Proteins AT4G21940 39.850 1.14e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g0154 Pkinase 4.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0154 - K08794 gmx:548089 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0154 1 1344628 1346300 Lja5g1611 5 17324912 17326322 ECH
Lja1g0154 1 1344628 1346300 Lja1g0154 1 1344628 1346300 ECH