Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0153 ATGGAGCAATCGGTTTTGGACGACATAATCAACCGTCTTCTTGAAGTTCGCCACCGTCCAGGGAAGCAGGTGCAGCTATCGGAGTCCGAGATCCGCCAACTCTGCGCCGCTTCTAGATTTGCGGTATTCCCTTTTTCTTTGTTTTTGTTGTATAATCCATATATTGTACTGCCTGATATTATTAGCATAGTAATCATAGTACAAAGTGATATACATGGCCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGGGGATTACCTCCTGAGGCCAACTACTTATTTTTGGGGGACTATGTGGATCGGGGGAAGCAGAGTTTAGAAACAATTTGTCTTCTCCTTGCTTTTAAAATAAAATATCCTGAGAACTTTTTCCTGTTGAGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGATTTTATGATGAATGCAAGAGAAGGTTTAATGTAAGGTTATGGAAGACATTTACAGATTGCTTCAACTGCCTGCCTGTGGCAGCCCTTATTGATGAAAAGATTTTGTGTATGCATGGAGGAATTTCTCCGGACTTACATAATTTGGATCAGATTAGAAATCAACAGCGGCCTACTGATGTTCCTGATACAGGTTTACTTTGTGATCTTCTTTGGTCTGACCCTAGCAGAGATGTTCAAGAATGGGGAATGAATGACAGGGGTGTTTCATATACATTTGGCGCTGATAAGGTCTCAGAGTTTCTCCAGAAACATGATCTTGATCTAATTTGTCGTGCTCATCAGGTTGTGGAGGATGGATACGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCAGCACCGAATTATTGTGGGGAGTTTGACAATGCTGGTGCCATGATGAGTGTTGATGAGTCACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAACAAAGCTCAATTTCGGAAGTACAACCACTGCTAAGCCTGGAAACTCTCCAGCAGCTTTAAAGTCCTTCCTGGGTGCGAAAGTATGA 1011 0.4105 MEQSVLDDIINRLLEVRHRPGKQVQLSESEIRQLCAASRFAVFPFSLFLLYNPYIVLPDIISIVIIVQSDIHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGISPDLHNLDQIRNQQRPTDVPDTGLLCDLLWSDPSRDVQEWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPADKKTKLNFGSTTTAKPGNSPAALKSFLGAKV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0153 336 Gene3D - 1 315 IPR029052 -
Lja1g0153 336 ProSitePatterns Serine/threonine specific protein phosphatases signature. 127 132 IPR006186 GO:0016787
Lja1g0153 336 SUPERFAMILY Metallo-dependent phosphatases 19 309 IPR029052 -
Lja1g0153 336 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 330 - -
Lja1g0153 336 SMART pp2a_7 26 306 IPR006186 GO:0016787
Lja1g0153 336 Pfam Serine-threonine protein phosphatase N-terminal domain 6 39 IPR031675 -
Lja1g0153 336 PRINTS Serine/threonine phosphatase family signature 160 186 IPR006186 GO:0016787
Lja1g0153 336 PRINTS Serine/threonine phosphatase family signature 93 120 IPR006186 GO:0016787
Lja1g0153 336 PRINTS Serine/threonine phosphatase family signature 268 284 IPR006186 GO:0016787
Lja1g0153 336 PRINTS Serine/threonine phosphatase family signature 246 266 IPR006186 GO:0016787
Lja1g0153 336 PRINTS Serine/threonine phosphatase family signature 126 150 IPR006186 GO:0016787
Lja1g0153 336 PRINTS Serine/threonine phosphatase family signature 189 216 IPR006186 GO:0016787
Lja1g0153 336 PRINTS Serine/threonine phosphatase family signature 64 91 IPR006186 GO:0016787
Lja1g0153 336 CDD MPP_PP1_PPKL 5 304 - -
Lja1g0153 336 Pfam Calcineurin-like phosphoesterase 65 256 IPR004843 GO:0016787
Lja1g0153 336 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0153 Lja-Chr1 1333547 1335951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0153 59 249 Calmodulin-binding Proteins AT5G63870 32.743 5.02e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0153 K06269 - gmx:100816262 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0153 1 1333547 1335951 Lja5g1612 5 17340932 17347637 ECH
Lja1g0153 1 1333547 1335951 Lja1g0153 1 1333547 1335951 ECH