Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0152 ATGTCTGATAATTGGGCCGAGGGTGGTGGAATGCAGTGCAATAAGAAAGCCCAACCCACAAAATGCAAAACCCTAAACCCTGCCTCCCCTATATCTATGCCATTTCTGCACCTCTTCCATTGTGTTCTTCAACCTCAGTTTCACTCCAAGGAACAGGGAAATTTTGTTGTTGTCAAGATGACAAATCCAAAAGTTTTCTTTGATATTGCGATTGGAAAGACGAAGGCTGGGCGAATTTTAATGGAACTTTTTGCTGATGTTACCCCAAAAACAGCTGAAAACTTCAGGGCTCTGTGTACTGGGGAAAAGGGGATTGGTAAATCTGGGAAAGGTTTACACTTCAAAGGATCTGCATTTCATCGGATTATTCCAGATTTCATGTGTCAAGGTGGTGATTTTACGAGAGGGAATGGGACTGGAGGGGAGTCAATTTACGGGGCCAAGTTTGCTGATGAGAATTTCAAGCTGAAGCACACTGGACCTGGTATTCTTTCCATGGCAAATGCTGGACCCAATACAAATGGTTCTCAGTTCTTCATATGCACTGCAAAGACTCCATGGCTTGATGGAAAACATGTTGTGTTTGGAAAAGTTGTTGATGGATACAATGTAGTGAAGGAGATGGAGAAGGTGGGTTCCGGTGGTGGGAGTACGTCAGAAAAAGTGGTAATTGAAGATTGTGGGCAGATAGTAGAGAACTGA 702 0.4345 MSDNWAEGGGMQCNKKAQPTKCKTLNPASPISMPFLHLFHCVLQPQFHSKEQGNFVVVKMTNPKVFFDIAIGKTKAGRILMELFADVTPKTAENFRALCTGEKGIGKSGKGLHFKGSAFHRIIPDFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFFICTAKTPWLDGKHVVFGKVVDGYNVVKEMEKVGSGGGSTSEKVVIEDCGQIVEN* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0152 233 CDD cyclophilin_ABH_like 63 228 - -
Lja1g0152 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 83 98 IPR002130 GO:0000413|GO:0003755
Lja1g0152 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Lja1g0152 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Lja1g0152 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Lja1g0152 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 189 IPR002130 GO:0000413|GO:0003755
Lja1g0152 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 61 232 - -
Lja1g0152 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 61 232 - -
Lja1g0152 233 SUPERFAMILY Cyclophilin-like 57 230 IPR029000 -
Lja1g0152 233 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 114 131 IPR020892 GO:0003755|GO:0006457
Lja1g0152 233 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 69 228 IPR002130 GO:0000413|GO:0003755
Lja1g0152 233 Gene3D - 54 233 IPR029000 -
Lja1g0152 233 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 66 229 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0152 Lja-Chr1 1330491 1332093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0152 73 211 U-box Gene Family AT5G67530 48.571 5.04e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0152 K01802 - vvi:100261571 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0152 1 1330491 1332093 Lja1g0152 1 1330491 1332093 ECH