Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0149 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCAATTTCACCAAACCACCGCCTCCTCCGCCCCTCCAACCACCGCGACCAACGGCCTTCTCCCCAACACCGATGGGTCCCACATACTGTACCCTCACTCTGTCGCCTCGGCGGTGTCGTCTCAGCTTGAACCGGCCAAGCGCAAGAGAGGGAGGCCCAGGAAGTACGGTACTCCTGAGCAAGCTCTCGCTGCGAAGAAAGCTTCAACGTCGTCGTTTTCAGCGAGTCCCAGGGAGAAGAAGCCTCAACCTCACTCTCACTCTCAAGCTTTCACTCCTTCCTCCCCTTCTTACTCCTCCAAGAAATCCAATTCTCTCTCTCTAGGCAATGCAGGACTAAGCTTCACTCCACATGTAATTACTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGGTGTGCATTCTGTCTGCATCTGGGTCCATCTCTAATGCATCTCTTCGTCAACCAGCATCGTCCGGAGGCAATGTTACATATGAGGGCCGTTTTGAGATTATTTCACTTACTGGTTCCTATGTCCATAATGAAACTGGAGCTCGAAGTGGTGGTCTCAGCGTATGCTTGTCAAACATTGATGGACAAATCATTGGTGGTGGAGTTGGTGGGCCCCTTAAAGCTGCTGGTCCTGTTCAGGTCATTATTGGTTCATTTGTACTTGACACCAAGAAAGACACTGGTGTAAAAGGTGATGCCTCTGCCAGCAAGTTGCCATCACCAGTCGGTGAATCAGCATCAAGTTTAGGTTTCCGCCAAGCAGTTGAACGTTCCAGCGGCAATCAAATCCAGGGAAATGATGAGCATCAAGCTATGGGCGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGTGACACCTCCCCGGTCCACTGACTGGGGTGCTCATCCGGACTCAAGAAGTACTGCTTATGAGCTGACAGGAAGACCAGGTCATGGAGCGCACCAGTCTCCTGAGAATGGAGGATATGATCAAATTCCTGATTGA 1056 0.5019 MEPNDNQLTSFFHHHQFHQTTASSAPPTTATNGLLPNTDGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSASPREKKPQPHSHSQAFTPSSPSYSSKKSNSLSLGNAGLSFTPHVITVAAGEDVGQKIMLFMQQSRREVCILSASGSISNASLRQPASSGGNVTYEGRFEIISLTGSYVHNETGARSGGLSVCLSNIDGQIIGGGVGGPLKAAGPVQVIIGSFVLDTKKDTGVKGDASASKLPSPVGESASSLGFRQAVERSSGNQIQGNDEHQAMGGSHFMIQQLGLHVTPPRSTDWGAHPDSRSTAYELTGRPGHGAHQSPENGGYDQIPD* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0149 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 343 IPR039605 GO:0003680
Lja1g0149 351 MobiDBLite consensus disorder prediction 78 93 - -
Lja1g0149 351 MobiDBLite consensus disorder prediction 310 351 - -
Lja1g0149 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 343 - -
Lja1g0149 351 Gene3D - 131 253 - -
Lja1g0149 351 ProSiteProfiles PPC domain profile profile. 123 264 IPR005175 -
Lja1g0149 351 MobiDBLite consensus disorder prediction 250 271 - -
Lja1g0149 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 242 IPR005175 -
Lja1g0149 351 MobiDBLite consensus disorder prediction 18 117 - -
Lja1g0149 351 MobiDBLite consensus disorder prediction 18 38 - -
Lja1g0149 351 CDD DUF296 130 241 IPR005175 -
Lja1g0149 351 MobiDBLite consensus disorder prediction 100 117 - -
Lja1g0149 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0149 Lja-Chr1 1281780 1286080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0149 39 351 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 51.929 2.88e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0149 - - gmx:100809675 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0149 1 1281780 1286080 Lja1g0149 1 1281780 1286080 ECH