Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0146 ATGTTGAAGCTTTTGCGCGTTCTTCCTTCCACTTCCAGGAATTGGGTATTGGAAATGGAAGTGTTATCATCATCTAGGAACCCTCAAGTTAGAGACTTTTCTACTGCTGCTAGAGAAACCTATGTTGCTAAAGGATACACTACGGATCGCGTATTTGCTCCTTATTATGTTTACAAGGGCAAAGCTGCTATGTCATTGTCTCCTGTTCTTCCAACTTTTACTAAGTTGGATTCTGGGGCTCTTGTGGTTGAGCGTCGCGGTTCCATAATGATGGTTTTCACGCCTGCTATCGGGGAGCGCAAATATGACTGGGAGAAGAGACAGAAATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAGCCATGGGTCCCCAAGATTCTTGTGAATTCTTCCATGACCCCTCAATGTCATCAAGTAATGCTGGTCAAGTAAGGAAGAGTTTATCAATTAAGCCTCATGCAAACAGTAGCGGTTACTTTGTGTCTTTGACTGTTGTCAATAACCTGTTAAATGCCAAAGAAAACTTCAACGTGCCTGTCACTACTGCTGAGTTTGCTGTGATGAAGACGGCTTGCAGTTTTGCATTGCCACACATCATGGGCTGGGACCGTTTAACTAATCAGCAGTCCAGTCTGCCCGGAGGGACAGTTGGCCTTCAGTCGAAGGTGGACAAACCAGTTTTCGACTTGGAATGGGATAAGTGA 708 0.4463 MLKLLRVLPSTSRNWVLEMEVLSSSRNPQVRDFSTAARETYVAKGYTTDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGYFVSLTVVNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKVDKPVFDLEWDK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0146 235 SUPERFAMILY ssDNA-binding transcriptional regulator domain 49 233 IPR009044 GO:0003677|GO:0006355
Lja1g0146 235 Pfam Whirly transcription factor 57 191 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lja1g0146 235 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 30 235 - -
Lja1g0146 235 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 30 235 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lja1g0146 235 Gene3D Transcriptional Coactivator Pc4; Chain A 42 213 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0146 Lja-Chr1 1251533 1255343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0146 30 235 Whirly Transcription Factor Family AT1G71260 59.155 4.38e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lja1g0146 Whirly 1.4e-57 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0146 - - var:108343725 317.005