Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0139 ATGGCGAAGAGAGACGGAGATGGCGGAGAAGGAGGAGGAGGAGCGGTTGCGGCGGCGGCGGAATTGAAGGAGAAACTACGGGGATTGGTGAAGATGATTGTGGAGAGCGATGACTACACTGTTCAAACCGCTGATGATGCAATCGCTACTCTCTCCGCTCTCAAGCTTCTCAAGAAGAACAAGACTCGAGAGAATCGAACTGCATCGTTCTCTGACAAATTCGACCCTCCTACTGAATTTCGCTGCCCGATTTCTACCCAGTTGATGACTGATCCTGTTATCTTGTCCACTGGCCAGACTTATGATCGGCCATTTATTCAGAGGTGGTTGAATGAAGAAGGACACAGGACATGCCCTCAAACCCAGCAAGTCTTGTCTCACTCGATCCTTATTCCTAATTTTCTTGTTCGAGAAATGATTACGAAGTGGTGCAAGGACCGTGGAATTGAGATGCCAAAGCCTGTTCGGGATGTTGATGAAGCAGTGACCAAAGCGGATAGACACCGTTTAAATTCATTGCTTCATAAGTTGTCATTGTCTCTTTCTGATCAGAAAGAAGCTGCGAAAGAGCTTCGCCTCTTAACGAAGCGGATAGCTACGTTTCGAACCCTTTTTGGGGAGTCAGGTGTGATTGCACGGTTGCTCAGTCCGTTATCACCTGGCAGGACTTGTGCTGACCCTGATCTCCATGAGGACTTGATCACAACTGTTCTGAATCTCTCTATTAATGATGATAACAAAAAAGTGCTTGGAGAGGATCCAGCTGTCATTTCTCTGCTTATTGATGCCTTGAAGTCTGGAACCATTCAAACAAGAAGCAATGCTGCGGCGGCTTTTTTCTCCATATCAGCACTTGATTCCAACAAGCACATCATTGGAAAATCTGGAGCTATCAAACATTTGATTGACCTTTTAGATGATGGACATCCATTAGCCGTGAAAGACGCTGCTTCAGCCATATTCAACATCTGTGTCATGCACGAGAACAAGGGGATCGCCGTGCAAGAAGGGGCTGTTCGGGTTATTATGAAGAAGATCAAGGACAACATTATAGTAGATGAACTGTTAGCCATACTGGCTCTCCTCTCCACTCATCCCAAGGCTGTTGAAGAAATGGGTGATCTAGGTCCTGTTCCTTTCTTACTGGGTAATATTAGAGAGACTACCTCAGAGCGAAGCAAGGAGAATTGTGTTGCAATGCTATATACAATCTGTTACAATGATAGAACAAAGTGGAAGGAAATTAGAGAAGACGAAAGGGTCAACGGCACACTGTCTAAGCTTGCACAGTGTGGAACTTCAAGGGCGAAAAGGAAGGCTAGTGGTATTCTTGAGAGGGTCAATAGATTTTTCTCCTTAACCCACACTGCTTGA 1374 0.4563 MAKRDGDGGEGGGGAVAAAAELKEKLRGLVKMIVESDDYTVQTADDAIATLSALKLLKKNKTRENRTASFSDKFDPPTEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEEGHRTCPQTQQVLSHSILIPNFLVREMITKWCKDRGIEMPKPVRDVDEAVTKADRHRLNSLLHKLSLSLSDQKEAAKELRLLTKRIATFRTLFGESGVIARLLSPLSPGRTCADPDLHEDLITTVLNLSINDDNKKVLGEDPAVISLLIDALKSGTIQTRSNAAAAFFSISALDSNKHIIGKSGAIKHLIDLLDDGHPLAVKDAASAIFNICVMHENKGIAVQEGAVRVIMKKIKDNIIVDELLAILALLSTHPKAVEEMGDLGPVPFLLGNIRETTSERSKENCVAMLYTICYNDRTKWKEIREDERVNGTLSKLAQCGTSRAKRKASGILERVNRFFSLTHTA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0139 457 Pfam Armadillo/beta-catenin-like repeat 288 324 IPR000225 GO:0005515
Lja1g0139 457 ProSiteProfiles U-box domain profile. 75 150 IPR003613 GO:0004842|GO:0016567
Lja1g0139 457 PANTHER U BOX DOMAIN-CONTAINING 16 455 - -
Lja1g0139 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 16 455 - -
Lja1g0139 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 152 IPR013083 -
Lja1g0139 457 SUPERFAMILY ARM repeat 180 446 IPR016024 -
Lja1g0139 457 SMART arm_5 243 284 IPR000225 GO:0005515
Lja1g0139 457 SMART arm_5 365 406 IPR000225 GO:0005515
Lja1g0139 457 SMART arm_5 285 325 IPR000225 GO:0005515
Lja1g0139 457 Pfam U-box domain 77 147 IPR003613 GO:0004842|GO:0016567
Lja1g0139 457 SUPERFAMILY RING/U-box 73 154 - -
Lja1g0139 457 CDD RING-Ubox_PUB 80 123 IPR045210 -
Lja1g0139 457 Gene3D - 173 449 IPR011989 -
Lja1g0139 457 SMART Ubox_2 79 143 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0139 Lja-Chr1 1159557 1162074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0139 139 457 U-box Gene Family AT3G07360 58.359 8.34e-123 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0139 - - gmx:100806619 622.083