Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0138 ATGAGTCCTCCAGCTGCACCTGACATGGAACTTGTCAACCCTCCGGTTGCTCCTGTCGATAATGGCGACCAAGCTGACTCTCGCTTCGCCGACTTTTGCAAGAATGGGCTAGCATTGGATGAGAAAAGTTGTAAAGAAGCAATCAATCTGTTCGGAGAAACCGAACATATTCTACTAACATATGTTTCATCAATGGGAAATGGAATGTCTGAAGATGCTGAGCGATACTGGTTCGCTTTTATTTTATACTCTGTCAAGAGATTGACTACAAAAAATGAGGAGAGTGGGGAGGAAGAGACTGAGAACACTGGGCTGACCTTTTGTCGTATATTGAGAGCAGCTAAGCTTAGCATTGCAGATTTTTTTAAAGAGCTTCCTCAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGTAATTTATATGGCAAAGATTGGGAAAACAGACTTCAGGCAAAGGAGATGCATGCCAATGCTATTCATTTGACGATTCTTAGCAAGTACTACAAACGTATATTTGCAGAGTTCTTTGTTGCTTCTGATGCAAATATTGAAAAGAACTCATCTGTTACTGTTCATGCATCTGATTATCATCGCTTTGGATGGTTACTTTTCTTGGCACTTCGTGTACACGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAACGGTTTAATTTCCATATTGGCTATCTTAATTATTCATGTTCCTGCTCGTTTTCGGAATTTCAACATCAGTGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGCGTGGACCTCCTCGCTTCACTTTGCAACATCTATAACACTTCAGAAGATGAGATGAGGAAGACCATGGTGAAAGCGAATACTTTAATAGCAGATATATTGAAGAAGAAGCCCTGTTTGGCATCTGAATGCCAAACTGATAACCTAGAGAATTTTGATAGAGATAGCTTGACCTATTTCAAAGATCTGATGGAGGAATCATCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGATTATGATGACATGATTCGTAACAAGGGTGAACTAGATGAGAGGTTATTCATAAATGAGGATGACAGCCTGCTAGCTTCAGGAAGTTTGTCTGGTGGCTCTGTTTCAGCTAGTGGTCTAAAGAGGAAATTTGATTCGATAGCATCACCTGCTAAGGCTGTTATAAGTCCGCTCTCACCCCACCGCTCTCCTGCATCCCATGCTAATGGCGTCACAGGTAGTACAAATTCAAAGATGGCAGCCGCCACCCCTGTAAGCACGGCAATGACTACTGCAAAGTGGCTTCGGACTGTTGTTTGTCCACTTGCCTCAAAGCCCTCACAAGAGCTAGAGCGATTCTTGACATCATGTGACAAGGATATTACTAATGATGTGGTGTGCAGAGCACTGATTATATTGCAGACTATTTTTCCTAGTAGTCCTCTTGGTGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAATATCATGGACAATATATGGGCGGAACAGCGAAGATTAGAAGCACTGAAGTTTTACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAACACTACATGCAACTAATTTAACTTCTCTTCTAACTAATGAGAGGTTTCATAGGTGTATGCTTGCATGTTCTGCAGAATTGGTCCTGGCAACTCACAAGACTGTAACAATGCTGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCGCTCCCAAGAGAATTGAGGCGACATCTGAACTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGCAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAGATTGCAATGCAGATTAACTTCTCTTACGGAGGGCTTCCTCCTGTGCCTTCCTTGCCTAAGCTTGAGACTTCACCAATTCAAATTGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAACATCGAAATGTGTTTGTGGAACGGAATTCTTTCGCTTCACCAGTGAAAGATCGGCTTCTTCCCTTCAGCAACCCTATGTCAAAGCTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAACCAAACCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGACTACAATTATCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAATCAACGGACATCTCTTTTCTTCAACCGCCATATTGACCAAATCATTCTGTGTTGCTTCTACGGAGTTGCAAAGATTTCACAACTCAGCCTAACCTTTAGGGAGATCATACAGGGCTACAGAAAGCAACCACATTGCAAACACCAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATCAGCACGTCGTAATGGAGCTAGTAAACAGAGAACAGGACAGGATCATGTCGACATCATTACATTTTACAATCAAATATTCATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCAAATGCATGAAGTTAATAATAAAAATGACGCTCAATGTCCTGGGTCTCCTAAAATATCACCTTTCCCAAGCCTCCCTGATATGTCCCCAAAAAAAGTGTCTGCCGCACACAATGTTTATGTCTCTCCCTTACGATCGTCGAAGATGGATGCTCTAATATCACATAGCTCGAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCAATCAATAACCATTTGAATGGCAACCGCAAGGTCCGAGGTGCCCTCAATTTCGATGATGCAGCAGATGTGGGTTTGGTTAGTGACTCCATGGTTGCAAACAGCCTCAATCTGCAGAATGGAAGTTCTGCATCATCTACATTGAAGTCTGAGCAACCTGACTCTTAA 3072 0.4271 MSPPAAPDMELVNPPVAPVDNGDQADSRFADFCKNGLALDEKSCKEAINLFGETEHILLTYVSSMGNGMSEDAERYWFAFILYSVKRLTTKNEESGEEETENTGLTFCRILRAAKLSIADFFKELPQFVVKAGPILSNLYGKDWENRLQAKEMHANAIHLTILSKYYKRIFAEFFVASDANIEKNSSVTVHASDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNISDSSRFVKKSSKGVDLLASLCNIYNTSEDEMRKTMVKANTLIADILKKKPCLASECQTDNLENFDRDSLTYFKDLMEESSLPSSLNILEKDYDDMIRNKGELDERLFINEDDSLLASGSLSGGSVSASGLKRKFDSIASPAKAVISPLSPHRSPASHANGVTGSTNSKMAAATPVSTAMTTAKWLRTVVCPLASKPSQELERFLTSCDKDITNDVVCRALIILQTIFPSSPLGERCVTGSLQSANIMDNIWAEQRRLEALKFYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWQKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSYGGLPPVPSLPKLETSPIQIGDTRSPKRLCTEHRNVFVERNSFASPVKDRLLPFSNPMSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQRTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIQGYRKQPHCKHQVFRSVFVDWSSARRNGASKQRTGQDHVDIITFYNQIFIPSVKPLLVELGPGGATMKSDQMHEVNNKNDAQCPGSPKISPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNHLNGNRKVRGALNFDDAADVGLVSDSMVANSLNLQNGSSASSTLKSEQPDS* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0138 1023 MobiDBLite consensus disorder prediction 396 411 - -
Lja1g0138 1023 PANTHER BNACNNG22930D PROTEIN 9 1012 - -
Lja1g0138 1023 SUPERFAMILY Cyclin-like 740 913 IPR036915 -
Lja1g0138 1023 Gene3D - 709 914 - -
Lja1g0138 1023 SUPERFAMILY Cyclin-like 425 620 IPR036915 -
Lja1g0138 1023 Pfam Retinoblastoma-associated protein A domain 417 618 IPR002720 GO:0005634|GO:0051726
Lja1g0138 1023 SMART DUF3452_2 88 234 IPR024599 -
Lja1g0138 1023 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
Lja1g0138 1023 Coils Coil 329 349 - -
Lja1g0138 1023 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 9 1012 IPR028309 GO:0006357|GO:0051726
Lja1g0138 1023 Pfam Retinoblastoma-associated protein B domain 742 873 IPR002719 GO:0005634|GO:0051726
Lja1g0138 1023 MobiDBLite consensus disorder prediction 391 411 - -
Lja1g0138 1023 Gene3D - 420 608 - -
Lja1g0138 1023 Gene3D - 195 353 - -
Lja1g0138 1023 SMART RB_A_2 417 618 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0138 Lja-Chr1 1148373 1156424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0138 9 1023 Core Cell Cycle Gene Families AT3G12280 69.388 0.0 1413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lja1g0138 RB_A 2.3e-63 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0138 K04681 - gmx:100779266 1700.64