Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0134 ATGATATCAAAGAAGGATGACACTTATATCTACACAATTCCTCTTGTCTCAGAGAAAGAATTTTGGTTGCCTTGCTATATGCTATCATTTTCCCAAAGTAAATGTGAGTTGAATTTCAACAGCACATATGTGGCATTTGGTGAGTGCGGGGACGCGAAAGAGGACATAAACAACTGGGGTGGCGATGGTTTTCCGGCCACCGTATGTTGTCGTAATACTCTTACAGTTCTGTCCGATGCCATGGCGGTGCAAGCCCGTAACTCAACAGCGGGACAATTGTTTGTTTCCCATGATCAATGGCAGAGCTGTGGTGACTCATTTCATCCGCAACAAGGGATGTCACTGTCATCATGTGGCTTTGATAGCTTATACTTTGGGAGTTCCAAATGCTCTAGTGTAGTTTTGCAGGATGTGAGGAGCATGGATCAGTACCAAGATGCATTGAGCAAGTGCTCCCACTTCGACCATCCATACAATGAGGCTTGTGCAGATTGTAGCGAGGCAATTTTGAGTTTGAGAGATAGTTTGTATGCTTCTGAAATGGGGAAGGACAACAACAATGATACTGAGAGAGTCATATGTGGGGTGGCTGCTCTGGTTGCTGTGGCAGCTGACAAATCTGACGACCCTTCCTTACCTGATAAATTCTTGCGCTGCTTGCCTGCTCCAGGAGCAAAAAAAACCACGAGTGCTCTTGTAGTGTTGCTTCTTGTGTTTCTGGTAAGATGCATTTCCATAAAGCCTCGTAAGCGGGTTCAGTTGAGAGAGATCACCACTTGCTCTGGATTACTGTTCTCAAAAACTGAAATTGAGAAAGCAATCAATTTTGGCGGTGAAAAGATATGCCTTGGACGTGGGAGTGCAGGAATGGTTTACAAAGGTGTTCTTCCCAGCGGTCAGGTTGTGGCGGTCAAACATTTAACAAAGGGTAACAATGCTGATTCTTTCACTCGAGAAGTTGAAGGCCTTTCCAGGCTTCGTCACCCAAATTTGGTTTGTCTATTTGGTTGTTGCACAGAAGATGGAGATAGATATCTGGTCTATGAATTTTGTGCAAATGGAAATCTAGCTCAACATCTCTTAAGAAAAGATAGTCATTTGACATGGGAAACAAGAGTCAAGATTTTGAGAGATTGTTCATTCGCGCTCAAGTATCTCCACCATCATATAGGGGGTTGTGTTGTACATAGAGATATCAAGCTTACTAATATTCTCTTGACTGAGAACTATGAAGCCAAATTGTCGGATTTTGGATTGGCAAAGATGATGGGGATGGAAGAGACCAAGGTTTTTACTGATGTTAGAGGAACCATAGGTTACATGGATCCAGAGTACATGACTAATGCCAAGCTAACTTGCGCTAGTGATGTCTACAGTTTTGGTATTGTTGCTTTACAAATTCTGTCAGGACAGAAAGTCATAGAATTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGTATGGGAAAACGTCCTGTGTCAGATTTTGAAGATCCAAGACTTGGTGGACAAGTTGATAAGGAGGACTTTAACGCCATCTTACAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGCCCAACCATTGAGATCATTTTTGACGAATTGGACAAGGTCTACAAGGACGCAAGAGCAAGGAAGGAGAAAAAACTGGATGCATGTACATCAACAACATTCAACCCGAGCGAAAGTCCTCCAAAATTGACTTCTAATTGA 1737 0.4295 MISKKDDTYIYTIPLVSEKEFWLPCYMLSFSQSKCELNFNSTYVAFGECGDAKEDINNWGGDGFPATVCCRNTLTVLSDAMAVQARNSTAGQLFVSHDQWQSCGDSFHPQQGMSLSSCGFDSLYFGSSKCSSVVLQDVRSMDQYQDALSKCSHFDHPYNEACADCSEAILSLRDSLYASEMGKDNNNDTERVICGVAALVAVAADKSDDPSLPDKFLRCLPAPGAKKTTSALVVLLLVFLVRCISIKPRKRVQLREITTCSGLLFSKTEIEKAINFGGEKICLGRGSAGMVYKGVLPSGQVVAVKHLTKGNNADSFTREVEGLSRLRHPNLVCLFGCCTEDGDRYLVYEFCANGNLAQHLLRKDSHLTWETRVKILRDCSFALKYLHHHIGGCVVHRDIKLTNILLTENYEAKLSDFGLAKMMGMEETKVFTDVRGTIGYMDPEYMTNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPVSDFEDPRLGGQVDKEDFNAILQIAVLCVAKSSKGRPTIEIIFDELDKVYKDARARKEKKLDACTSTTFNPSESPPKLTSN* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0134 578 SUPERFAMILY Protein kinase-like (PK-like) 258 541 IPR011009 -
Lja1g0134 578 Pfam SPARK 31 187 IPR043891 -
Lja1g0134 578 PANTHER OS01G0253100 PROTEIN 38 555 IPR045271 GO:0004714|GO:0006468
Lja1g0134 578 SMART serkin_6 277 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0134 578 ProSiteProfiles Protein kinase domain profile. 277 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0134 578 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 38 555 - -
Lja1g0134 578 Gene3D Phosphorylase Kinase; domain 1 244 350 - -
Lja1g0134 578 Pfam Protein kinase domain 283 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0134 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 394 406 IPR008271 GO:0004672|GO:0006468
Lja1g0134 578 Gene3D Transferase(Phosphotransferase) domain 1 351 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0134 Lja-Chr1 1120978 1125243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0134 245 540 Receptor kinase-like Gene Family AT3G19300 38.614 7.05e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Lja1g0134 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0134 - - gmx:100807158 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0134 1 1120978 1125243 Lja3g1855 3 21159324 21162477 PCT