LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g0132	ATGAATTGCTTTCCCTGTTTTTCCAAGTCCAAGAGATGCAATAGCAAGAGGGAGCAGGGGGCAACATCACATGAAAACGTCGTAACAACAAAAACACCAGATGTAAGGAAACAAAAGCCAGATGAACCGAACCAGGTTGACACTTCAAGCATTCAAGCACAGAATTTCACTTTCCGTGAGCTTGCAATTGCAACAAAAAATTTCAGGCAAGAGTGCTTGATGGGTGAAGGTGGCTTTGGCAGAGTTTACAAAGGAACCATTCCAGCAACAGGACAGGTAGTAGCAGTGAAGCAACTTGACCGAAATGGCATGCCGGGCAGCAAGGACTTTCTGGTTGAGGTTTTGATGTTAAGTCTTTTGAACCATGAAAATCTTGTCAAACTCACCGGTTATTGTGTTGATGGTGATCAACGTCTTTTGGTGTATGAATTCATGCCTGGGGGTTCTTTAGAGAGCCGTCTTCTTGAGCGAGGACCTGATGTACCTTCGTTAGATTGGTACAGCAGAATGAAAATAGCATCTAACGTTGCGAAAGGGTTGTGGTACTTACATGACAAGGCCAATCCCTCGGTTATATACCGGGACTTGAAATCGTCGAACATCTTACTGGACAATGATCTCAATGCAAAACTATCTGATTATGGACTGGCCAAACTTGCTGGTAAAGATAAGATGAACATTGTGCCTACAAGAGTTATGGGTACATATGGTTACAGTGCTCCAGAGTATGTGAGAACAGGTAACCTCACATTAAAATCAGATGTGTTCAGTTTTGGGGTTGTCTTGCTAGAGCTCATAACTGGAAGAAGAGCCATTGACACCACAAGACCTCATGATGAGCAAAACCTAGTTTCATGGGCACAACCAATATTCAGGGATCCAAAAAGATATGCAGATATGGCAGATCCACATCTGGACAAAAATTTCCCAGAAAAGGATCTCAATCAAGTTGTTGCAATTGCAGCCATGTGCTTGCAGGAGGAAGCAGCAGCTCGTCCTTTGATGAGTGATGTTGTAACTGCTCTGAGTTTTCTTAACACAACTCCTCCAGAGGTTGTTCCTACCCCTCTCCAGCCTGCCAATTCGGCCTCTCATAAGAGTGCTGCTAGTGAAAGTGAAAGTGAGAGTGAAAGCGAAAGTGAGAGCGAGAGCGAAAGTGACGCAGGAAATGGTAAGGACAACCACAGTTCCAATGTTCAAAATGAGGCTGCAGCTAGTGCAAAATTCCTAGAGAATGAGGTCTCAGAAGCTGAATATGATTACTATGGGAATGAAAACCATCATGATTATAGTCCACAGGATGCGCAACAAACCAAGGAGTTTTACTCCAAATCAAGCCGCAAAAGCAGCACCAAATCACGGACTTCTGGCCGCAGAAGCAGCACTAGTTCAGAAAATGGAAGTGGTAGGAAGAAAAAGCATGGTTTAAGCCAGAAGAGCAGCAAGAAATCTTCTGGGAGAGATTTAAGCCAGAAGAGCAGCAAAAAATCTTCTGTCAAAGTTTTAAGCCACAAGGAAAGTAAAGAATCAGAGGATGGAAGTCATTCATACCATACTCATGGAAATGTTTCCACAAGCCGGCACAGTAGCAGCAGCAGCAGCAGTGAGGAGTCACAAGATGAAGGTGTTCGTTATGATCGTGGTGATAGCAGGCCATCACTAGGGACTCCATCTTTTGGCCTATTCAGCACTGACAGTGTCCACTATGAGGAAGGGAGCAGTACACATTCATATCATAATTTTGATCATCCCAGCATGGGATTTGAAGATCATGGAAGTTTTCACTATTTCGAACATTCCAGCAGCAAGGGATCAGATAAGAGCAGTGTCCATTCACGATAG	1842	0.4387	MNCFPCFSKSKRCNSKREQGATSHENVVTTKTPDVRKQKPDEPNQVDTSSIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGMPGSKDFLVEVLMLSLLNHENLVKLTGYCVDGDQRLLVYEFMPGGSLESRLLERGPDVPSLDWYSRMKIASNVAKGLWYLHDKANPSVIYRDLKSSNILLDNDLNAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVFSFGVVLLELITGRRAIDTTRPHDEQNLVSWAQPIFRDPKRYADMADPHLDKNFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLNTTPPEVVPTPLQPANSASHKSAASESESESESESESESESDAGNGKDNHSSNVQNEAAASAKFLENEVSEAEYDYYGNENHHDYSPQDAQQTKEFYSKSSRKSSTKSRTSGRRSSTSSENGSGRKKKHGLSQKSSKKSSGRDLSQKSSKKSSVKVLSHKESKESEDGSHSYHTHGNVSTSRHSSSSSSSEESQDEGVRYDRGDSRPSLGTPSFGLFSTDSVHYEEGSSTHSYHNFDHPSMGFEDHGSFHYFEHSSSKGSDKSSVHSR*	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g0132	613	Pfam	Protein kinase domain	70	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	352	369	-	-
	Lja1g0132	613	CDD	STKc_IRAK	74	342	-	-
	Lja1g0132	613	PANTHER	OS07G0668900 PROTEIN	1	576	-	-
	Lja1g0132	613	SUPERFAMILY	Protein kinase-like (PK-like)	44	346	IPR011009	-
	Lja1g0132	613	PANTHER	RECEPTOR KINASE-LIKE PROTEIN	1	576	-	-
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	429	464	-	-
	Lja1g0132	613	Gene3D	Transferase(Phosphotransferase) domain 1	145	351	-	-
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	517	538	-	-
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	485	516	-	-
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	15	48	-	-
	Lja1g0132	613	ProSiteProfiles	Protein kinase domain profile.	68	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	556	581	-	-
	Lja1g0132	613	Gene3D	Phosphorylase Kinase; domain 1	26	144	-	-
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	583	613	-	-
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	352	398	-	-
	Lja1g0132	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	191	203	IPR008271	GO:0004672\|GO:0006468
	Lja1g0132	613	MobiDBLite	consensus disorder prediction	418	613	-	-
	Lja1g0132	613	SMART	serkin_6	68	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g0132	Lja-Chr1	1104000	1106968	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g0132	1	375	Glycoside Hydrolase	AT3G07070	60.714	3.81e-161	466

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Lja1g0132		Pkinase	1.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g0132	-		-	gmx:100807682	723.391