Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0118 ATGGGAAGCAGTGAGGAAGAGAAATCTACCAAGTCTGAAAAGCCGCCTTCACCTGTAACAGTGGATCAGGCCAACCATACCAACCAGACCAATGTTCATGTCTATCCTGATTGGGCAGCCATGCAGGCATATTATGGGCCAAGAGTTCCTATGCCACAATACTACAACTCAGCTGTGGCTTCTGGTCACCCTCCTCACCCCTACATGTGGGGGCCACCACAGCATATGATGCCACCTTATGGGCCTCCTTATGCAGCAATTTATCCACACGGTGGAGTTTATAGTCACCCCGGAGTTCCTGTTGGCCCACATGCACATAGCCAAGGAATTCCGTCTTCACCTGCTACCGGGACTCCTCTAAGCATAGAGACACCTCCCAAATCATCTGGAAATAATGAGAAGGGCTTGATGAAGAAATTGAAAGGGTTTGATGGACTTGCTATGTCAATAGGCAATGGCCATGCTGAGAGTGCGGAGCGTGGAGCTGAAAACATGCTATCACTGAGTGGAGATACTGAGGGCTCCAGTGATGGAAGTGATGGCAATACTGCTGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCAACCACTGATGGAGAAGGGAAAACTGAGATACAAGGTAGTCCAGATTCCAAAGAAACTCGAGCTTCGAGTAAGATGGTGCCAGTTGCAGGACAATTAGTCGGATCTGTATTGGAGCTGAGAAACCCTTCCAATATTCCTTCTAAAACAAATCCCACAAGTGCTCCACAACCTTGTGCGGTATTGCCTGCAGAACCTTGGCTACAGAATGATCGTGAGCTGAAGCGTGAGAGGAGGAAACAATCAAATCGAGAATCTGCTAGGAGGTCCAGACTAAGGAAGCAGGCTGAGGCTGAAGAACTGGCACGAAAAGTTGAATCCTTGAATGCTGAAAATGTGACCCTGAAATCAGAAATAAATCGACTGGCTGAAAGTTCTGAAAAAGTTAAGGTGGAAAATGCCACGTTAAAGGAAAAACTTAGAAATGCTCAACTGGGACAATCAGAAGAGATAATTTTGAATGGCATTGACAGCGAGAGGGCTACACCTGTAAGTACAGAAAACTTGTTATCAAGAGTTAATAATTCCAGTTCTAACGATAGAACTGTGGAGGATGAGAATGGTTTTCGTGACAACAAATCAAACTCTGGCTCAAACTCTGGCGGCGGTGCGAAGCTGCATCAATTACTGGATGCGAGTCCCCGAGCTGATGCTGTGGCGGCTGGTTAA 1263 0.4687 MGSSEEEKSTKSEKPPSPVTVDQANHTNQTNVHVYPDWAAMQAYYGPRVPMPQYYNSAVASGHPPHPYMWGPPQHMMPPYGPPYAAIYPHGGVYSHPGVPVGPHAHSQGIPSSPATGTPLSIETPPKSSGNNEKGLMKKLKGFDGLAMSIGNGHAESAERGAENMLSLSGDTEGSSDGSDGNTAGANQTRRKRSREGTPTTDGEGKTEIQGSPDSKETRASSKMVPVAGQLVGSVLELRNPSNIPSKTNPTSAPQPCAVLPAEPWLQNDRELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAENVTLKSEINRLAESSEKVKVENATLKEKLRNAQLGQSEEIILNGIDSERATPVSTENLLSRVNNSSSNDRTVEDENGFRDNKSNSGSNSGGGAKLHQLLDASPRADAVAAG* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0118 420 MobiDBLite consensus disorder prediction 14 29 - -
Lja1g0118 420 MobiDBLite consensus disorder prediction 267 304 - -
Lja1g0118 420 MobiDBLite consensus disorder prediction 109 131 - -
Lja1g0118 420 Pfam G-box binding protein MFMR 1 100 IPR012900 -
Lja1g0118 420 Pfam bZIP transcription factor 270 331 IPR004827 GO:0003700|GO:0006355
Lja1g0118 420 Pfam Disordered region downstream of MFMR 133 236 - -
Lja1g0118 420 PANTHER G-BOX-BINDING FACTOR 3 1 420 - -
Lja1g0118 420 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 420 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lja1g0118 420 SUPERFAMILY Leucine zipper domain 272 325 IPR046347 GO:0003700|GO:0006355
Lja1g0118 420 MobiDBLite consensus disorder prediction 156 308 - -
Lja1g0118 420 MobiDBLite consensus disorder prediction 101 136 - -
Lja1g0118 420 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 271 334 IPR004827 GO:0003700|GO:0006355
Lja1g0118 420 SMART brlzneu 269 333 IPR004827 GO:0003700|GO:0006355
Lja1g0118 420 MobiDBLite consensus disorder prediction 358 420 - -
Lja1g0118 420 MobiDBLite consensus disorder prediction 203 219 - -
Lja1g0118 420 MobiDBLite consensus disorder prediction 236 255 - -
Lja1g0118 420 Coils Coil 282 337 - -
Lja1g0118 420 MobiDBLite consensus disorder prediction 168 188 - -
Lja1g0118 420 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 276 291 IPR004827 GO:0003700|GO:0006355
Lja1g0118 420 Gene3D - 272 328 - -
Lja1g0118 420 MobiDBLite consensus disorder prediction 358 380 - -
Lja1g0118 420 CDD bZIP_plant_GBF1 274 322 IPR045314 GO:0003700|GO:0006355
Lja1g0118 420 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0118 Lja-Chr1 1002203 1008901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0118 1 420 bZIP Transcription Factor Family AT2G46270 50.824 3.31e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja1g0118 MFMR_assoc 7.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0118 K09060 - gmx:778133 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0118 1 1002203 1008901 Lja1g0118 1 1002203 1008901 ECH
Lja1g0118 1 1002203 1008901 Lja3g1815 3 20554374 20560206 PCT