Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0100 ATGCACAGTGAACATCTTCACAAAATGGAACATGTTAGTCTCATTGATGAACTGATCCAAGGAATGGAGCTGGCAAAGCAGCTCAGTGACCATCAGCTGGTTTCTTCTTCTTCTCCATCATCCCAAGAAACCAATGAATTCTTGCTTGACAAAATACTTTTGTCTTACCAGAAGGCACTTGCCACGCTCAAGCATGGATCTAATGCGGGAGAGAGTCCTAAAACTACCAGCTGCAGCGTGATGGATTCCCACTGTTCTTTTACGAGTGAGAGCCCCAGAAGTGAGGTCATGGACCTTGAATTTCAGCACCAAGCTGTCTTAAAGAAAAGAAAGACCATGCCCAGATGGACAGAGCAAGTGAAGATTTGCTCAGGATCAGGACTTGAGGGATCTTTGGATGATGGATATGGCTGGAGAAAATATGGCCAAAAGAGTATTCTTGGAGCCAAGTTTCCCAGAGGATATTATAGATGCACACATAGAAATGTACAAGGGTGCCTAGCAACAAAGCAAGTTCAAAGATCAGATGAAGACCCAACAACAATTGAGGTGACCTACAGAGGTAGACACACTTGCAAGCAAGCTAAGCATTTAAACAAGAAACTCCCAGCAAAAGTAAAGTTGGGGGAAAATCAAGTTCACAATGACCAAAAGAATCAACTACCACTACAGGAGAAAACCCAACAAACCCCAGCAACTTTCATGTTTAAAGCAGAGGATGAGGACAAAACAGAGGAATTGGAAACCAAGGAGGATCTTAATATCTTCCCTTGCAATTGGTTTTGCTTCCCTTCTCCATCAATTGGATCAGGAAGTGAAGAATCCAACATATTATCCCATGCCATGATGGAAAACCATTTCATAGAAAGCTTTTCTGCTGCATTCATACCACCAGTAACTTCAGAATCAAACCTTCTGTGTCTATCAGCATACCACTCGGGCAACAATGGACTAAGCCAAAATGTAAAAACCTCAGAATCCGATATCAGTGAGATAGTTTCAGCCCCAACTTCAGTCACCAATTCCCCAATCCTGGATTTAGATATCTTGCTATCTAATGGGGAATTTGACTCGGATTTCCCTTTCAACACCCCTGAATACTTTTCTTCATTAAATTTTTCACTTTCAGCTAATTAG 1137 0.4186 MHSEHLHKMEHVSLIDELIQGMELAKQLSDHQLVSSSSPSSQETNEFLLDKILLSYQKALATLKHGSNAGESPKTTSCSVMDSHCSFTSESPRSEVMDLEFQHQAVLKKRKTMPRWTEQVKICSGSGLEGSLDDGYGWRKYGQKSILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCKQAKHLNKKLPAKVKLGENQVHNDQKNQLPLQEKTQQTPATFMFKAEDEDKTEELETKEDLNIFPCNWFCFPSPSIGSGSEESNILSHAMMENHFIESFSAAFIPPVTSESNLLCLSAYHSGNNGLSQNVKTSESDISEIVSAPTSVTNSPILDLDILLSNGEFDSDFPFNTPEYFSSLNFSLSAN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0100 378 Gene3D WRKY domain 121 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0100 378 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 4 363 IPR044810 GO:0003700
Lja1g0100 378 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g0100 378 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0100 378 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 4 363 - -
Lja1g0100 378 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g0100 378 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0100 Lja-Chr1 813034 814470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0100 15 205 WRKY Transcription Factor Family AT5G24110 46.632 2.95e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g0100 WRKY 2.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0100 - - gmx:100790050 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0100 1 813034 814470 Lja1g4885 1 66890087 66892601 ECH
Lja1g0100 1 813034 814470 Lja1g0100 1 813034 814470 ECH
Lja3g1789 3 20176710 20180008 Lja1g0100 1 813034 814470 ECH
Lja4g0348 4 2800493 2801898 Lja1g0100 1 813034 814470 ECH
Lja1g0100 1 813034 814470 Lja3g1789 3 20176710 20180008 PCT