Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0094 ATGAATGCAAAGGGGCATAAATTTGTGAGGTTTGGGGACTGGAAATCAGAGTCATCTTTTAGTATGGAGCAGGAAGGTTCTGTAAACAATGGATATCACAAGAGAAAAGGCATACCGAGTGTAAGTGCTATTTTGAAGAGTATTGGAAGAAGACTCGAGAGTGGAACAGAGAAAGTGAAAAGCTTGAGAAGACATTCCGCTGCTGTCCATCCTTTAAGTGATGGAAAGACAAAAAAGCCGACTTCCGGGTGCAATATTCTTGATCCTCAAGGGTCAATGCTTCAGAAATGGAATAAAATATTTGTAATCACATGTGTGATGGCAGTTTCTGTGGATCCGCTGTTCTTTTACATTCCAGTGATTGTTGGTAAAAACAAGTGTCTTGATTTAGATGGAGCATTGCAGATTACTGCCAGTGTTCTACGCACTTTCTTTGATCTGTTCTACATTCTTCACATAATCTTTCAGTTTCAAACGGGGTTTATTGCTCCTTCTTCTCGTGTTTTCGGGAGGGGTGAGCTGGTTGAGGATCCTGTGGCCATAATGAAAAGATACTTAAGTTCACACTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGGTGCTTGTTTTAGCTGTAGTTCCAAACCTGAAAAACTCATATCCATTTCTAGCAAAGGATTTGTTGAAGTATACAATAATAATCCAGTTAATTCCGAGGCTTCTGCGGATCCGTCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACAGAGACAGCATGGGCTGGAGCTGCTTTTAATCTATTTCTGTATATGCTAGCAAGCCATTTGGTTGGAGCTTTCTGGTATCTCCTTTCAGTAGAATCAGAGGTGCGGTGCTGGCGTCGTGAGATGAAGAATGCTACGCTCTTTCATGAGTCCTACTTGGGCTGCAAACCACGCGATCCAGCTATCTTTCAACTTCTAAATCGTACTTGCTCATTGATTGACCCTGATCAAATCAATGAAGAAAACATCTTCAACTTTGGAATATATTTCGGAGCTCTACAATCACGTGTGATAGATTCAACAACTGATTTTCCTCCGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGGAATTTAAGTTCTCTTGGACAAGACCTCAAGACAAGTACTTATGTCCCAGAGATAATCTTTGCAATCTTCATTGCCATCTTTGGATTGGTCTTATTCTCATTACTTATTGGGAACATGCAGGAATATCTGCAATCTACTACTGTTAGAGTGGAAGAGATGAGAGTGAAGAGACAGGACGCAGAACGGTGGATGTCTCACCGTATGCTACCTGAGAACTTGAAGGGAAGAATTAGAAGTTATGAACAGTACAAATGGCAAGAGAATAGGGGTGTGGAGGAGGAGACATTAATTCGTGACCTCCCAAAAGATCTCCGAAGGGACATAAAGCGCCATCTTTGCTTAGCTTTGGTTAAAAAAGTTCCACTGTTTGAAAAAATGGATGAGCAGTTGTTGGATGCAATGTGCGATAGACTGAAGCCAGTCCTTTTTACAGAGAAGAGTTGCATTGTTCGCGAGGAAGATCCAGTTGATGAGATGCTATTCATAATGCGCGGAAAAGTTTCTACTATGACAACAAATGGCGGCAGAACTGGTTTCTTTAACTCCTTAGATCTAGTAGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCTAATTCCTCCTCAAATCTACCAACTTCAACAAGAACAGTCCAAACAATTTCAGAAGTCGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTATTTAACAGCAAACAGCTCCAGCACACTTTCAGGTTCTATTCCCCACAATGGAAAACTTGGGCTACATGTTTCATACAAGCAGCTTGGCATAGATATTGTAAAAAGAAAATTGAGAGGACATTGCGTGAAGAAGAAGACAAACTAAAAGGTGTTCTTGCAATTGAGAATGGATCCACTCTAAGCCTTGGTGCAACCATATATGCATCAAAGTTTGCTGCAAAGGCATTACGAAACTTGAGAGAAAATAGCAGACAAAGCAGAACGCCACAGAGACTGCTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGAAACACTAG 2166 0.4141 MNAKGHKFVRFGDWKSESSFSMEQEGSVNNGYHKRKGIPSVSAILKSIGRRLESGTEKVKSLRRHSAAVHPLSDGKTKKPTSGCNILDPQGSMLQKWNKIFVITCVMAVSVDPLFFYIPVIVGKNKCLDLDGALQITASVLRTFFDLFYILHIIFQFQTGFIAPSSRVFGRGELVEDPVAIMKRYLSSHFIIDILSIIPLPQVLVLAVVPNLKNSYPFLAKDLLKYTIIIQLIPRLLRIRPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHLVGAFWYLLSVESEVRCWRREMKNATLFHESYLGCKPRDPAIFQLLNRTCSLIDPDQINEENIFNFGIYFGALQSRVIDSTTDFPPKFFYCFWWGLRNLSSLGQDLKTSTYVPEIIFAIFIAIFGLVLFSLLIGNMQEYLQSTTVRVEEMRVKRQDAERWMSHRMLPENLKGRIRSYEQYKWQENRGVEEETLIRDLPKDLRRDIKRHLCLALVKKVPLFEKMDEQLLDAMCDRLKPVLFTEKSCIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSLDLVAGDFCGEELLTWALDPNSSSNLPTSTRTVQTISEVEAFALMADDLKFVASQFRRLFNSKQLQHTFRFYSPQWKTWATCFIQAAWHRYCKKKIERTLREEEDKLKGVLAIENGSTLSLGATIYASKFAAKALRNLRENSRQSRTPQRLLPLLPPKPAEPDFTAQKH* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0094 721 Gene3D - 100 416 - -
Lja1g0094 721 Gene3D Helix hairpin bin 419 483 - -
Lja1g0094 721 Coils Coil 645 665 - -
Lja1g0094 721 SMART cnmp_10 492 623 IPR000595 -
Lja1g0094 721 CDD CAP_ED 492 624 IPR000595 -
Lja1g0094 721 MobiDBLite consensus disorder prediction 691 721 - -
Lja1g0094 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 719 - -
Lja1g0094 721 SUPERFAMILY cAMP-binding domain-like 421 611 IPR018490 -
Lja1g0094 721 Gene3D Jelly Rolls 490 610 IPR014710 -
Lja1g0094 721 Pfam Ion transport protein 97 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g0094 721 SUPERFAMILY Voltage-gated potassium channels 88 414 - -
Lja1g0094 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 719 - -
Lja1g0094 721 ProSiteProfiles cAMP/cGMP binding motif profile. 492 576 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0094 Lja-Chr1 768239 772354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0094 1 718 Ion Channels AT5G53130 63.172 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0094 K05391 - gmx:100797784 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0094 1 768239 772354 Lja1g0094 1 768239 772354 ECH
Lja1g0094 1 768239 772354 Lja3g1778 3 19970481 19975224 PCT