Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0093 ATGGAATCCGACGATAGCAAGAAGATGTACAACCTGTTCGTGAAGCACTTGGATGGCAAAACCCTAACCCTATTATTCCCATCTCCGATCCTCTACGCCACTTCCATCAAGGATCGCCTCTTCCAACTCACCGGAATTCCCTCCCAGCTCCAGCGTCTCGTCACCGGTTGCCGCCATCTAAACGACGAGAAATCGTTGCTATGTTGCTCGCCGGAAGAGGGGAACATGTTCCCGTCGGTGCGGCTGCTGCTGAGTCTGAAAGGCGGCAAGGGAGGGTTTGGCTCCCTTCTGCGTGGGGCGGCGACGAAGGCTGGGCAGAAGAAGACCAACAATTTCGACGCCTGCAGGGATATGAGTGGGAGAAGGCTGAGGCACGTGAACGCTGAGAAGAGGTTGGAGGATTGGAAGGCTGGGGAAGAGGAGAGGAAGCTGGAGAAGGTTGCTGAGGAGTTTCTGAAGAAGCAGATGAAGAATAAGGGGAAGAAGGGTGATGTCGATAGCGAGGCCCACAAGTATGTTGCTAAGTATAGGGAAGAGTCTGAACGCTGCACTGCAGAGGTTGCTTTGTCTGTTCAGGAAGCTTTGTCTTCTCTCAAGCGCAAGTCCTCACCATCCAATGCTTCCCCTCCCCGTGATGGCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAAGTGAATGAAAGCGATAGTGATGATTCTGATGTGGAGGAGACTGAGAAATCTGTTTTGTTAAATAGCCAGAATGAGTTGGGCTCAAATGAGGCTGAAGATAGTCCAGGGTCTGTAACTGGTGGGAAGCAGGATGAAGACTCTTCTGGTGCCGGCTCATTTGAAATTGGATGTGAAGAAGAGAAGGAAACTGTTGTGGAAGAGGGCAAAGTGGAATCTGTTGGAACACAGAATGGTGGAACTATTCAGGCCGAGCTGAGTGTTGCTGCTGAACCTGTGGTGAATGAAGAGATGATAGAGGCTAATGCTATGCCCTGTCCAGAGTCAGTGCTGTCTGAAATCAATGCTGAAGATAATGGTTATCAGGATTGCAATGGATCTGTTGCTGACAAGTCTGGTGGCACAGCTATTCAAGCCTCTGAAACTGTGACTTGTGCAGGCAAATCTAATGATATGGAGATTGATGGATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGCTCACCAAGCACTAGTATTCCAGCTTTGGAGGAGCCTCTGAATTTTGATGTTTTTAATTCAGCTACTGAACTTGAGGTTCTTGGCTTGGAAAAGTTGAAGTCTGAACTACAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGCGCTGCCAGGCTTTTTCTTTTAAAATCAACTCCCCTAGACAAACTTCCAAAGAAGCTGCTCGCAAAGAAATGA 1395 0.486 MESDDSKKMYNLFVKHLDGKTLTLLFPSPILYATSIKDRLFQLTGIPSQLQRLVTGCRHLNDEKSLLCCSPEEGNMFPSVRLLLSLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEDWKAGEEERKLEKVAEEFLKKQMKNKGKKGDVDSEAHKYVAKYREESERCTAEVALSVQEALSSLKRKSSPSNASPPRDGKKLKIWMGKRKVNESDSDDSDVEETEKSVLLNSQNELGSNEAEDSPGSVTGGKQDEDSSGAGSFEIGCEEEKETVVEEGKVESVGTQNGGTIQAELSVAAEPVVNEEMIEANAMPCPESVLSEINAEDNGYQDCNGSVADKSGGTAIQASETVTCAGKSNDMEIDGSLEHKAAVNEESSPSTSIPALEEPLNFDVFNSATELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0093 464 MobiDBLite consensus disorder prediction 215 230 - -
Lja1g0093 464 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 159 IPR024974 -
Lja1g0093 464 Gene3D - 2 109 - -
Lja1g0093 464 MobiDBLite consensus disorder prediction 196 301 - -
Lja1g0093 464 MobiDBLite consensus disorder prediction 240 270 - -
Lja1g0093 464 Pfam Replication stress response SDE2 C-terminal 394 463 - -
Lja1g0093 464 PANTHER SPLICING FACTOR SF3A-RELATED 9 463 - -
Lja1g0093 464 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 463 - -
Lja1g0093 464 SUPERFAMILY Ubiquitin-like 6 75 IPR029071 -
Lja1g0093 464 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0093 Lja-Chr1 763343 765804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0093 397 463 C2H2 Transcription Factor Family AT5G06160 49.254 3.20e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0093 K25059 - gmx:100781694 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0093 1 763343 765804 Lja1g0093 1 763343 765804 ECH