Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0092 ATGGACATGTTGATGTTCCTCTTTCACTTGTTCATGTTTTGTCTTGTCATATCTGCCTCAGGTGATTGCCAATATTCTTCATGCGGAGATAATAACATCCTTATTCGTTTCCCCTTCCGATTTCAAGGTCAGCAACAGCCTCATTGTGGCTATCCTGGTTTCAATTTAACTTGTACTGATGATAGCAGAATTGTTCTAATACTCCCTCATACCGGAAACTTGTATGTCCGCAATATCAACTATCTCAGACAGCAGATACAAGTCTATGACCCTGATGATTGCCTTCCTAATCGTCTTCAAAGCCTCAATCTTTCAGGTTCTCCCTTCACTGCCATTCTTCTCCGTAGCTACACCTTCATAAGCTGCCCAACTCAGAACATGGGGTCACAATTCATTCCTGTTGAGTGTCTTAGCAATTCGACACATTTTGTATCAGTTGTTCTTTCAGTGAACTTGACCAATCCATTGCCTGAGTCCTGCAATGTTATTAGAAACCTCTCAGTTCCAGTTGCAAATGTCAGAGATCACCTAAGTGAAGATCTTTGGTTGACATGGTATTCACCTGACTGTAGACAGTGCGAATCACAAGGTGGCATGTGCAGGTTTGAGAGCAGACACAGTGATCAAGTTCTTTGTTTCTATGATCAACAACCGGGTCGCGAATCACGACATGGTCGAGTTTATAAACTCAGTATATTATCTGCTGTTGGACCAGCTCTGATTTGTGTCATTGTGTTGGCATGCTTTGTGTACTACGGACATAGAAGAGTTATTACATCCAGAACTGTTGTTGCACTATCACTGCAAACTACAGAAGATAATACTAGGATGGGTGAGAGCAGAAGATTACCAGGACTCAATGACCTGTGTTGCTCTATATGCTTGTCAGAGTACAAAAGCAAAGACACCATTAGATGCATACCTGAATGCACGCACTGTTTCCATGCTCACTGCATAGATGAATGGCTTCGCATGAATGGTACATGCCCACTATGCCGCAACACTCCCTCCCCTTCACATGTTCATGTTGTGTCCAGTACCTCTTAG 1047 0.4279 MDMLMFLFHLFMFCLVISASGDCQYSSCGDNNILIRFPFRFQGQQQPHCGYPGFNLTCTDDSRIVLILPHTGNLYVRNINYLRQQIQVYDPDDCLPNRLQSLNLSGSPFTAILLRSYTFISCPTQNMGSQFIPVECLSNSTHFVSVVLSVNLTNPLPESCNVIRNLSVPVANVRDHLSEDLWLTWYSPDCRQCESQGGMCRFESRHSDQVLCFYDQQPGRESRHGRVYKLSILSAVGPALICVIVLACFVYYGHRRVITSRTVVALSLQTTEDNTRMGESRRLPGLNDLCCSICLSEYKSKDTIRCIPECTHCFHAHCIDEWLRMNGTCPLCRNTPSPSHVHVVSSTS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0092 348 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 344 - -
Lja1g0092 348 SUPERFAMILY RING/U-box 283 336 - -
Lja1g0092 348 SMART ring_2 291 332 IPR001841 -
Lja1g0092 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 338 IPR013083 -
Lja1g0092 348 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 344 - -
Lja1g0092 348 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Lja1g0092 348 Pfam Wall-associated receptor kinase C-terminal 170 216 IPR032872 -
Lja1g0092 348 Pfam Ring finger domain 291 333 IPR001841 -
Lja1g0092 348 ProSiteProfiles Zinc finger RING-type profile. 291 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0092 Lja-Chr1 761489 763037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0092 23 343 C3H Transcription Factor Family AT2G46495 40.774 3.45e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0092 - - gmx:100799895 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0092 1 761489 763037 Lja1g0092 1 761489 763037 ECH
Lja1g0092 1 761489 763037 Lja3g1776 3 19960264 19962496 PCT