Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0086 ATGGAATCAATTAGCATTGATAGCACTGTGACTATGATGGAAGAAGATGAGCATCCTCATCAGTTTTCTTCAACCTCCAAGCTACATAACATTGGTCCTGCCACCACCAGTGTTCATGACCTTCTTGAATGCCCCGTTTGCACAAATTCGATGTACCCTCCAATCCATCAGTGTCACAATGGACACACCCTTTGTTCAACATGTAAGACAAGGGTGCACAACCGATGCCCAACTTGCAGGCAGGAGCTCGGTGATATCAGGTGTCTGGCACTGGAGAAGATAGCAGAGTCACTGGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTACTACAGCAAGCTCAAACACGAGGCTGTTTGTAACTTCAGACCGTACAACTGCCCTTATGCCGGATCAGACTGCTCTGTTGTTGGTGATATTCCATACCTTGTTGGTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCATTGCTTTGGTCAGTATTTTTGCCTCCATTTTGAAGCCTTCCAGCTCGGTACAGCTCCTGTTTACATGGCATTCCTTCGGTTCATGGGAGACGAAAGAGAGGCCCGGAACTACAGCTATAGCTTGGAGGTTGGAGGCAATGGACGTAAACTTACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTGAGAGACAGTCATGATGGCCTCATCATATACCGTAACATGGCACTTTTCTTCTCAGGTGGGGACAGGAAAGAGTTGAAGTTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTTTGCATGCCCAACCTGTGTAGCTAG 921 0.4604 MESISIDSTVTMMEEDEHPHQFSSTSKLHNIGPATTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSDCSVVGDIPYLVGHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGTAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCMPNLCS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0086 306 CDD RING-HC_SIAHs 42 80 - -
Lja1g0086 306 PANTHER UBIQUITIN LIGASE SINAT3 1 298 - -
Lja1g0086 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 152 IPR013083 -
Lja1g0086 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 96 IPR013083 -
Lja1g0086 306 Pfam Seven in absentia protein family 86 285 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja1g0086 306 SUPERFAMILY TRAF domain-like 97 289 - -
Lja1g0086 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 298 - -
Lja1g0086 306 SUPERFAMILY RING/U-box 30 83 - -
Lja1g0086 306 ProSiteProfiles Zinc finger SIAH-type profile. 97 157 IPR013010 GO:0008270
Lja1g0086 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 285 IPR008974 GO:0005515
Lja1g0086 306 ProSiteProfiles Zinc finger RING-type profile. 44 80 IPR001841 -
Lja1g0086 306 CDD Sina 158 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0086 Lja-Chr1 730898 734317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0086 3 292 C3H Transcription Factor Family AT2G41980 72.449 4.84e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0086 K04506 - gmx:100792687 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0086 1 730898 734317 Lja1g0086 1 730898 734317 ECH
Lja3g1763 3 19818205 19821392 Lja1g0086 1 730898 734317 ECH